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December 17, 2008PLANT PHYSIOLOGY590 citationsOpen Access

Expansion and Diversification of thePopulusR2R3-MYB Family of Transcription Factors    

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OWOlivia WilkinsHNHardeep K. Nahal-BoseJFJustin Foong

Key Points

  • Characterize the complete R2R3-MYB transcription factor family in Populus trichocarpa to understand its role in lineage-specific evolutionary innovations.
  • Performed genome-wide identification, chromosomal placement, and phylogenetic analyses of R2R3-MYB family members in Populus trichocarpa.
  • Profiled expression patterns across multiple tissues, organs, and treatments, integrating the data into the newly developed PopGenExpress web resource.
  • Populus contains a substantially larger R2R3-MYB gene complement than other sequenced angiosperms, driven by whole-genome duplication and selective clade expansion.
  • Expanded gene clades demonstrated distinctive expression patterns linked to Populus life history traits, particularly wood formation and reproductive development.

Abstract

The R2R3-MYB proteins comprise one of the largest families of transcription factors in plants. R2R3-MYB family members regulate plant-specific processes, such as the elaboration of specialized cell types, including xylem, guard cells, trichomes, and root hairs, and the biosynthesis of specialized branches of metabolism, including phenylpropanoid biosynthesis. As such, R2R3-MYB family members are hypothesized to contribute to the emergence of evolutionary innovations that have arisen in specific plant lineages. As a first step in determining the role played by R2R3-MYB family members in the emergence of lineage-specific innovations in the genus Populus, the entire Populus trichocarpa R2R3-MYB family was characterized. The Populus R2R3-MYB complement is much larger than that found in other angiosperms with fully sequenced genomes. Phylogenetic analyses, together with chromosome placement, showed that the expansion of the Populus R2R3-MYB family was not only attributable to whole genome duplication but also involved selective expansion of specific R2R3-MYB clades. Expansion of the Populus R2R3-MYB family prominently involved members with expression patterns that suggested a role in specific components of Populus life history, including wood formation and reproductive development. An expandable compendium of microarray-based expression data (PopGenExpress) and associated Web-based tools were developed to better enable within- and between-species comparisons of Populus R2R3-MYB gene expression. This resource, which includes intuitive graphic visualization of gene expression data across multiple tissues, organs, and treatments, is freely available to, and expandable by, scientists wishing to better understand the genome biology of Populus, an ecologically dominant and economically important forest tree genus.

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Cite This Study

Wilkins et al. (2008) studied this question.

synapsesocial.com/papers/6a0ede767046b28dbef9aa57https://doi.org/10.1104/pp.108.132795
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