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May 22, 2026Crop Science0 citationsOpen Access

Phenotypic and genotypic analyses of large‐seeded soybean germplasm for vegetable soybean breeding

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CWChengjun WuRMRafael Goncalves MarmoLFLiliana Florez‐Palacios

Key Points

  • This research aims to analyze key traits of large-seeded soybean germplasm to support edamame breeding in the United States.
  • Evaluated 223 large-seeded soybean accessions at a field site in Fayetteville, AR, during 2023-2024.
  • Assessed phenotypic traits related to edamame quality including appearance, taste, and nutritional content.
  • Conducted a genome-wide association study to identify single-nucleotide polymorphisms linked to appearance traits.
  • Identified 30 elite accessions with superior trait combinations for edamame quality.
  • Detected 33 significant single-nucleotide polymorphisms associated with key phenotypic traits.
  • Achieved moderate to high accuracies in genomic prediction models, particularly with BayesA and genomic best linear unbiased prediction.

Abstract

Abstract Vegetable soybean Glycine max (L.) Merr., commonly known as edamame, is harvested at the R6 growth stage as green pods and beans, offering a rich source of protein, oil, fiber, and essential nutrients. While US market demand for edamame has increased over the past two decades, there is a lack of available domestic products compared to those imported from East Asia, underscoring the need for improved cultivars regionally adapted to the United States. In this study, 223 large‐seeded soybean accessions were evaluated in a field near Fayetteville, AR, in 2023 and 2024 for key traits related to edamame quality, including five appearance traits (R6 10‐pod, R6 10‐bean, and R8 10‐seed weights; R6 pod/R6 bean and R6 bean/R8 seed weight ratios), two taste‐related traits (sucrose and alanine contents), and four nutritional traits (protein, oil, fiber, and amino acid profiles). Based on these phenotypic traits and population structure, 30 elite accessions with superior and diverse trait combinations were identified as a core germplasm set to support edamame breeding for US production regions. Genome‐wide association study detected 33 single‐nucleotide polymorphisms significantly associated with appearance traits, while genomic prediction models demonstrated moderate to high accuracies, with BayesA and genomic best linear unbiased prediction consistently performing best across traits. These findings provide preliminary genetic and genomic resources to support the development of regionally adapted, high‐quality edamame cultivars for the expanding US market.

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Cite This Study

Wu et al. (2026) studied this question.

synapsesocial.com/papers/6a0ff3ecd674f7c03778ce1fhttps://doi.org/10.1002/csc2.70307
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