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May 25, 2026Han-guk hyeonmigyeong hakoeji/Applied microscopy1 citationsOpen Access

FPGA-based reconfigurable scanning and data acquisition system for scanning electron microscopy

KGKyubin GongJKJunseok KimBKB C Kim

Key Points

  • This study aims to develop and evaluate an FPGA-based system for scanning electron microscopy to enhance imaging performance.
  • Developed using Xilinx Artix-7 (XC7A35T) with dual-channel DAC and ADC.
  • Perfomed data acquisition with 10 s per-frame acquisition time.
  • Integrated with commercial SEM to test image-quality benchmarks.
  • Achieved 41–47% higher spatial SNR compared to the standard acquisition channel.
  • Demonstrated a 4.98× improvement in temporal SNR scaling.
  • Established effective hardware-level synchronization for better imaging under faster acquisition.

Abstract

Abstract We present an FPGA-based reconfigurable scanning and data acquisition system for scanning electron microscopy (SEM). Built on the Xilinx Artix-7 (XC7A35T), the system integrates dual-channel 14-bit DAC raster scan waveform generation, dual-channel 12-bit ADC signal acquisition with on-chip averaging, and real-time USB 2. 0 High-Speed data streaming at up to 40 MB/s. Integration with a commercial SEM (ModuleSci PicoEye-100) produced clearly resolved secondary-electron images, demonstrating stable raster operation in the fast-scan mode used for alignment and focusing. Standard data acquisition was performed at a per-frame acquisition time of 10 s, and a quantitative image-quality benchmark against the instrument’s built-in acquisition channel under this condition, using a grid-hole masking protocol and sub-pixel cross-correlation drift correction (Guizar-Sicairos et al. 2008), demonstrates substantial SNR improvements. The FPGA-based system achieves 41–47% higher spatial SNR and near-theoretical temporal SNR scaling, reaching a 4. 98 improvement over the commercial reference. These results highlight the effectiveness of hardware-level synchronization for improving the practical recoverability of high-frequency spatial detail under reduced acquisition time. The modular architecture is applicable to a broad range of point-scanning instruments beyond electron microscopy.

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Cite This Study

Gong et al. (2026) studied this question.

synapsesocial.com/papers/6a13e78b0e02ee3982d3232ehttps://doi.org/10.1186/s42649-026-00137-7
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