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August 20, 2020npj Digital Medicine144 citationsOpen Access

Deep learning for automated sleep staging using instantaneous heart rate

NSNiranjan SridharASAli ShoebPSPhilip Stephens

Structured PICO

Does a deep learning algorithm using instantaneous heart rate from ECG accurately predict sleep stages compared to expert-scored full polysomnography?

P
Population
11,325 nights of sleep data from the Sleep Heart Health Study (SHHS, n=8,299 nights), Multi-Ethnic Study of Atherosclerosis (MESA, n=2,033 nights), and Physionet Computing in Cardiology (CinC, n=993 nights/subjects) datasets. Includes subjects with varying age, gender, sleep apnea severity, and hypertension status.
I
Intervention
Deep learning algorithm (fully convolutional neural network with dilated blocks) using instantaneous heart rate (IHR) extracted from ECG to predict 4-class sleep stages (wake, light sleep, deep sleep, REM) for every 30-second epoch.
C
Comparator
Reference sleep stages manually scored by human experts using full polysomnography (PSG) data (including EEG, EOG, EMG, ECG, airflow, etc.).
O
Outcome
Overall 4-class accuracy and Cohen's kappa for sleep stage classification against reference stages.surrogate

A deep learning model using only instantaneous heart rate from ECG can accurately stage sleep and reproduce known clinical correlations, offering a scalable and low-cost alternative to full polysomnography.

Limitations

  • Algorithm underestimates deep sleep in women
  • Model performance decreases on older subjects
  • Uses only instantaneous heart rate (adding signals like motion and breathing could increase accuracy)
  • Further analysis required to quantify performance on heart rate derived from other signals like PPG

Abstract

Clinical sleep evaluations currently require multimodal data collection and manual review by human experts, making them expensive and unsuitable for longer term studies. Sleep staging using cardiac rhythm is an active area of research because it can be measured much more easily using a wide variety of both medical and consumer-grade devices. In this study, we applied deep learning methods to create an algorithm for automated sleep stage scoring using the instantaneous heart rate (IHR) time series extracted from the electrocardiogram (ECG). We trained and validated an algorithm on over 10,000 nights of data from the Sleep Heart Health Study (SHHS) and Multi-Ethnic Study of Atherosclerosis (MESA). The algorithm has an overall performance of 0.77 accuracy and 0.66 kappa against the reference stages on a held-out portion of the SHHS dataset for classifying every 30 s of sleep into four classes: wake, light sleep, deep sleep, and rapid eye movement (REM). Moreover, we demonstrate that the algorithm generalizes well to an independent dataset of 993 subjects labeled by American Academy of Sleep Medicine (AASM) licensed clinical staff at Massachusetts General Hospital that was not used for training or validation. Finally, we demonstrate that the stages predicted by our algorithm can reproduce previous clinical studies correlating sleep stages with comorbidities such as sleep apnea and hypertension as well as demographics such as age and gender.

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Cite This Study

Sridhar et al. (2020) studied this question.

synapsesocial.com/papers/6a195fa2f9a68600c7d97207https://doi.org/10.1038/s41746-020-0291-x
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