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February 27, 2023Nature Communications44 citationsOpen Access

Noncanonical electromechanical coupling paths in cardiac hERG potassium channel

CBCarlos A Z BassettoFCFlavio CostaCGCarlo Guardiani

Key Result

Mutagenesis and molecular dynamics simulations identified a noncanonical electromechanical coupling path involving the S4/S1 and S1/S5 subunit interfaces that is crucial for hERG channel activation and inactivation.

Structured PICO

P
Population
In vitro and computational study using Xenopus laevis oocytes and molecular dynamics simulations to investigate the electromechanical coupling paths of the hERG potassium channel.
I
Intervention
Mutagenesis of residues at the S4/S1 and S1/S5 subunit interfaces
O
Outcome
Role of residues and interfaces in the activation and inactivation mechanisms (gating mechanism)surrogate

Demonstrates a noncanonical electromechanical transduction path crucial for the gating of the cardiac hERG potassium channel.

Limitations

  • The representation of the hERG channel employed may be a simplified model of the system.
  • Unavailability of experimental structures for the three closed states precludes computational characterization.
  • The structure of the inactivated state is currently rather elusive, requiring the use of the open state to predict the inactivation path.
  • The computational tool cannot guarantee that mutations on residues showing low betweenness centrality values will not have an impact on gating due to indirect effects.

Abstract

Abstract Voltage-gated potassium channels are involved in many physiological processes such as nerve impulse transmission, the heartbeat, and muscle contraction. However, for many of them the molecular determinants of the gating mechanism remain elusive. Here, using a combination of theoretical and experimental approaches, we address this problem focusing on the cardiac hERG potassium channel. Network analysis of molecular dynamics trajectories reveals the presence of a kinematic chain of residues that couples the voltage sensor domain to the pore domain and involves the S4/S1 and S1/S5 subunit interfaces. Mutagenesis experiments confirm the role of these residues and interfaces in the activation and inactivation mechanisms. Our findings demonstrate the presence of an electromechanical transduction path crucial for the non-domain-swapped hERG channel gating that resembles the noncanonical path identified in domain-swapped K + channels.

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Cite This Study

Bassetto et al. (2023) studied hERG potassium channel gating. Site-directed mutagenesis (leucine-scanning) vs. Wild-type hERG channel was evaluated on Voltage dependence of activation and inactivation (V1/2 and free-energy perturbation). Mutagenesis and molecular dynamics simulations identified a noncanonical electromechanical coupling path involving the S4/S1 and S1/S5 subunit interfaces that is crucial for hERG channel activation and inactivation.

synapsesocial.com/papers/6a21e5c6eee6463ca097879ahttps://doi.org/10.1038/s41467-023-36730-7
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