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June 24, 2026Scientific Reports0 citationsOpen Access

Coronary artery stenosis segmentation using U-Net architecture with customised loss function

NINimra ImanRARomana AzizMIMahwish Ilyas

Key Result

The proposed U-Net architecture with a customized loss function achieved an F1 Score of 61.47% for coronary artery stenosis segmentation, outperforming previous research which achieved 53.4%.

Key Points

  • The aim is to develop a deep learning framework for accurate segmentation of coronary artery stenosis.
  • Utilized U-Net architecture enhanced with squeeze-and-excitation and dense blocks.
  • Employed a customized loss function to improve performance.
  • Analyzed X-ray angiography images from 1,500 patients, with data augmentation applied.
  • Achieved precision of 0.5985 and recall of 0.6319.
  • F1 Score reached 61.47%, improving upon previous scores of 53.4%.
  • Successfully segmented stenotic regions despite challenges from small vessel sizes and low contrast.

Structured PICO

Does a U-Net architecture with dense blocks and a customised loss function improve automated coronary artery stenosis segmentation in X-ray angiography images compared to standard architectures?

P
Population
X-ray angiography images from 1,500 patients (ARCADE dataset: 1,000 training, 300 validation, 200 testing)
I
Intervention
U-Net architecture incorporating dense blocks with a customised loss function
C
Comparator
Standard U-Net, U-Net with squeeze-and-excitation blocks, and previous research methods
O
Outcome
Stenosis segmentation performance (precision, recall, F1 Score)surrogate

A customized U-Net deep learning architecture with dense blocks significantly improves automated coronary artery stenosis segmentation in X-ray angiography images.

Main Result

Absolute Event Rate: 61.47% vs 53.4%

Limitations

  • Lack of straightforward labelling of different coronary arteries in the dataset
  • Misclassifications due to vessel-like patterns, contrast noise, and subtle pathology

Abstract

The disorders that affect our heart and blood vessels are cardiovascular disorders, and they are the leading cause of death worldwide. A significant disorder among these is coronary artery stenosis. Stenosis detection is a time-consuming process that requires an expert cardiologist and is also prone to human error. A fully automated system can handle all these challenges. Therefore, we presented a deep learning-based framework for binary stenosis segmentation in the coronary arteries using an X-ray angiography dataset. In this research work, three architectures 1st standard U-Net, then the U-Net enhanced with squeeze-and-excitation blocks, and last the U-Net incorporating dense blocks, where the final configuration achieved the best performance in the stenosis segmentation task. A custom loss function is employed to enhance model performance, utilising the publicly available ARCADE dataset. This dataset comprises X-ray angiography images from 1,500 patients, with 1,000 for training, 300 for validation, and 200 for testing. The training dataset was augmented to address limited data availability and enhance model generalizability. The model achieved a precision of 0.5985, a recall of 0.6319, and an F1 Score of 61.47%, whereas previous research in this challenge has achieved only a 53.4% F1 Score. The experimental results show that our method can achieve promising performance, which successfully segments the stenotic regions under the effect of small vessel size and low contrast.

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Cite This Study

Iman et al. (2026) studied Coronary artery stenosis (n=1,500). U-Net architecture with customised loss function (Weighted Categorical Entropy and Dice loss) vs. Previous research / Standard U-Net was evaluated on F1 Score for binary stenosis segmentation. The proposed U-Net architecture with a customized loss function achieved an F1 Score of 61.47% for coronary artery stenosis segmentation, outperforming previous research which achieved 53.4%.

synapsesocial.com/papers/6a3c232cd15afadd906f9de5https://doi.org/10.1038/s41598-026-57585-0
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