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July 5, 2026ACS Medicinal Chemistry Letters0 citationsOpen Access

Structural and Biophysical Characterization of Aminobenzo d isothiazole 1,1-Dioxide SOS1 Ligands

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TPThiago M. PereiraARAtilio Reyes RomeroMLMarleen van der Laan

Key Points

  • The aim is to characterize aminobenzo[d]isothiazole ligands interacting with SOS1, a key factor in cancer signaling.
  • Synthesis and biophysical characterization of ligands
  • Binding affinity measurement using microscale thermophoresis and surface plasmon resonance
  • Structural analysis via X-ray crystallography
  • Compound 6f showed a binding affinity (K D) of 570 nM for SOS1
  • X-ray crystal structures refined binding hypotheses about pocket engagement
  • Identified hydrophobic packing and hydrogen bonding as key interactions in ligand recognition.

Abstract

High Resolution Image Download MS PowerPoint Slide SOS1 is a guanine nucleotide exchange factor that promotes KRAS activation by catalyzing GDP release and GTP loading, making SOS1-mediated nucleotide exchange an attractive therapeutic target in KRAS-driven cancers. Herein, we report the synthesis, biophysical characterization, and structural analysis of aminobenzo d isothiazole 1,1-dioxide SOS1 ligands. Compound 6f engaged SOS1 with a K D of 570 nM by microscale thermophoresis, supported by surface plasmon resonance. X-ray crystal structures of SOS1 bound to compounds 6b and 6f refined previous binding hypotheses regarding pocket engagement. Rather than being dominated by sulfone-mediated contacts, SOS1 recognition is primarily driven by hydrophobic and aromatic packing within the canonical pocket, a conserved ligand NH hydrogen bond to Asn879, and π-π stacking with Tyr884, recapitulating key features of BI-3406 binding. Comparative analysis further delineates vector requirements for productive engagement of KRAS-facing regions, providing a structure-based framework for future optimization of aminobenzo d isothiazole 1,1-dioxide SOS1 ligands.

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Cite This Study

Pereira et al. (2026) studied this question.

synapsesocial.com/papers/6a49f464f5d1d45b287ffe0ahttps://doi.org/10.1021/acsmedchemlett.6c00300
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