PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
October 9, 2009Nucleic Acids Research176 citationsOpen Access

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum

View Full Paper
HKHee Shin KimTMTerence D. MurphyJXJing Xia

Key Points

Key points are not available for this paper at this time.

Abstract

BeetleBase (http: //www. beetlebase. org) has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum. The database contains genomic sequence scaffolds mapped to 10 linkage groups (genome assembly release Tcas₃. 0), genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome tiling array data representing several developmental stages. The database was reconstructed using the upgraded Generic Model Organism Database (GMOD) modules. The genomic data is stored in a PostgreSQL relatational database using the Chado schema and visualized as tracks in GBrowse. The updated genetic map is visualized using the comparative genetic map viewer CMAP. To enhance the database search capabilities, the BLAST and BLAT search tools have been integrated with the GMOD tools. BeetleBase serves as a long-term repository for Tribolium genomic data, and is compatible with other model organism databases.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Kim et al. (2009) studied this question.

synapsesocial.com/papers/6a760d83cd662f67b2fbd710https://doi.org/10.1093/nar/gkp807
Ask AI
Helpful
Bookmark
Share
View Full Paper