PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
December 17, 2008Journal of Computational Chemistry322 citationsOpen Access

GridMAT‐MD: A grid‐based membrane analysis tool for use with molecular dynamics

View Full Paper
WAWilliam J. AllenJLJustin A. LemkulDBDavid R. Bevan

Key Points

Key points are not available for this paper at this time.

Abstract

GridMAT-MD is a new program developed to aid in the analysis of lipid bilayers from molecular dynamics simulations. It reads a GROMACS coordinate file and generates two types of data: a two-dimensional contour plot depicting membrane thickness, and a polygon-based tessellation of the individual lipid headgroups. GridMAT-MD can also account for proteins or small molecules within the headgroups of the lipids, closely approximating their occupied lateral area. The program requires no installation, is fast, and is freely available.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Allen et al. (2008) studied this question.

synapsesocial.com/papers/6a86f075fd179ab3599eba71https://doi.org/10.1002/jcc.21172
Ask AI
Helpful
Bookmark
Share
View Full Paper