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August 24, 2026Precision Agriculture0 citationsOpen Access

Phenology-adaptive machine learning for early mapping of field-scale corn crop yield using fusion of Sentinel-2 satellite spectral imagery, and weather-based accumulated heat units

AMArunachalam ManimozhianACAbhilash K. Chandel

Key Points

  • To develop a stage-aware machine learning framework for early, high-resolution corn yield mapping by fusing Sentinel-2 satellite imagery, vegetation indices, and accumulated growing degree days.
  • Analyzed 51,794 Sentinel-2 10 m pixel yield samples from a commercial farm across three seasons (2018: n=16,400; 2019: n=18,534; 2020: n=16,860), aligning spectral data to developmental stages (V4, V6, R1, R5, R6) using heat units and days after planting.
  • Trained and tuned four machine learning models (Random Forest, XGBoost, k-Nearest Neighbors, and Neural Network) on 2018–2019 data across 13 stage configurations, followed by independent validation on 2020 data without spatial interpolation.
  • R1 was the earliest single stage yielding viable predictions (RF: R² = 0.56, RMSE = 29.50%), but combining V6 and R1 inputs substantially improved early-season performance (RF: R² = 0.70, RMSE = 24.13%).
  • Full-season data yielded peak accuracy (RF: R² = 0.72, RMSE = 23.28%), but the V6 + R1 combination was identified as the optimal trade-off for operational in-season decision-making.
  • Random Forest exhibited the best cross-year generalization on the independent 2020 dataset, while Neural Networks matched accuracy and captured spatial features like center-pivot and edge gradients.

Abstract

Abstract Purpose Timely, accurate, and field-scale crop yield mapping is essential for precision crop management, yet most existing studies rely on late- or full-season data, limiting in-season decision-making. This study aims to develop a stage-aware earliest possible corn yield mapping framework that balances early data availability, predictive accuracy, and spatial fidelity by integrating Sentinel-2 imagery, vegetation indices (VIs), and accumulated growing degree days (AGDD). Methods Corn yield data were collected from a commercial farm over three growing seasons (2018–2020). The final modeling dataset included 51,794 Sentinel-2 10 m aggregated yield samples across three seasons: 2018 ( n = 16400), 2019 ( n = 18534), and 2020 ( n = 16860). Sentinel-2 raw spectral bands and derived VIs were organized for V4, V6, R1, R5, and R6 growth stages based on AGDD- and DAP-defined corn growth-stage windows, also confirmed visually on-ground, allowing observations from different planting and harvest dates across the three growing seasons to be aligned by crop developmental stage rather than calendar date. A stage-wise Pearson correlation and frequency-based selection identified informative and non-redundant VI subsets across crop development. Four machine learning models: Random Forest (RF), XGBoost (XGB), k-Nearest Neighbors (kNN), and a Neural Network (NNET; multi-layer perceptron) were trained using 13 input configurations, including individual growth stages and multi-stage combinations capturing phenological progression. Models were tuned via randomized search, trained on 2018–2019 data, and independently validated on the 2020 season. Yield predictions were mapped directly at 10 m Sentinel-2-pixel resolution without spatial interpolation to preserve fine-scale variability. Results Model performance was strongly influenced by phenological stage selection. Among single-stage inputs, R1 was the earliest stage where reliable yield mapping could be availed (RF: R² = 0.56, RMSE = 29.50%). While combining V6 with R1 stage inputs substantially improved predictive performance (RF: R² = 0.70, RMSE = 24.13%) for the yield mapping at the R1 stage, where V6-stage signals provided complementary yield-related information. The full-season combination (V4 + V6 + R1 + R5 + R6) produced the highest accuracy (RF: R² = 0.72, RMSE = 23.28%) but would be less suitable for early in-season decision-making. Early- or late-stage-only inputs (V4, R5, R6) showed weaker and less stable cross-year performance. Among algorithms, RF consistently generalized best to the independent 2020 dataset and is recommended for operational use. XGB showed strong training performance but reduced cross-year stability, kNN yielded moderate accuracy, and NNET achieved accuracy comparable to RF while closely reproducing observed spatial patterns such as center-pivot effects and edge gradients. Direct 10 m mapping preserved yield heterogeneity and avoided smoothing artifacts common in interpolation-based approaches. Conclusion Stage-aware feature selection and phenology-informed input combinations are critical for balancing yield prediction timeliness and accuracy. For operational in-season yield mapping, the RF model using the V6 + R1 stage combination provides a practical and reliable solution, enabling early, accurate, and spatially detailed yield estimates with robust cross-year performance. This study presents a deployable framework for integrating satellite time series and weather data into conventional (non-sequential) machine learning models to support proactive, within-season decision-making in precision agriculture.

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Cite This Study

Manimozhian et al. (2026) studied this question.

synapsesocial.com/papers/6a8c23d1bca056c88e6dfe4dhttps://doi.org/10.1007/s11119-026-10428-4
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