Improvements in Markov State Model Construction Reveal Many Non-Native Interactions in the Folding of NTL9

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Abstract

), and show that the MSM is an improvement over previously built models using conventional distance metrics. Additionally, the resulting model provides insight into the role of non-native contacts by revealing many slow timescales associated with compact, non-native states.

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Schwantes et al. (Tue,) studied this question.

synapsesocial.com/papers/6a03014759ea043e4c9e3aa9 https://doi.org/https://doi.org/10.1021/ct300878a

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