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As protein structure prediction tools become widely adopted across biology, there is a growing need for accessible methods to assess and visualize predicted protein-protein interactions (PPIs). Here we present LIVIA (Local Interaction Visualization and Analysis), a browser-based tool that computes local PPI confidence metrics across multiple prediction platforms, identifies predicted interface residues, embeds an interactive Mol* 3D viewer, and generates visualization scripts for ChimeraX and PyMOL. The tool automatically detects prediction formats; all parsing and computation occur locally on the user's machine. LIVIA is freely available at https://flyark.github.io/LIVIA .
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Kim et al. (Sun,) studied this question.
synapsesocial.com/papers/6a0eadde2eca052da647afb1 — DOI: https://doi.org/10.64898/2026.05.01.721633
Ah‐Ram Kim
Harvard University
Norbert Perrimon
Howard Hughes Medical Institute
Harvard University
Howard Hughes Medical Institute
Boston VA Research Institute
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