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A toolkit for analysing large-scale plant small RNA datasets | Synapse

August 19, 2008Open Access

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A toolkit for analysing large-scale plant small RNA datasets

SMSimon MoxonUniversity of East Anglia FSFrank SchwachWellcome Sanger Institute TDTamás DalmayUniversity of East Anglia

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Resumen

UNLABELLED: Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci. AVAILABILITY: The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk.

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Cite This Study

Moxon et al. (Tue,) studied this question.

synapsesocial.com/papers/6a650acddfe9f9fc9bef406f https://doi.org/https://doi.org/10.1093/bioinformatics/btn428

Also Consider

Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

1Specific Effects of MicroRNAs on the Plant Transcriptome2005 · 1,499 citations
2Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing2007 · 497 citations
3Plant and animal microRNAs: similarities and differences2005 · 279 citations
4microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants2005 · 2,308 citations
5PatMaN: rapid alignment of short sequences to large databases2008 · 205 citations