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Observational analysis reveals transaction handling issues in PostgreSQL with Bioperl-DB adaptors, indicating potential improvements in database loading scripts.
Hilmar writes: Here's the background. The current code in the bioperl-db adaptors to biosql run the connection with AutoCommit off, which means the client determines the transaction. Load_seqdatabase.pl (the main script for loading databases into biosql) treats one sequence entry as one transaction.
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A 2003 study studied this question.
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