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July 2, 2024NAR Genomics and BioinformaticsOpen Access

FlaHMM: unistrand flamenco-like piRNA cluster prediction in Drosophila species using hidden Markov models

Maria‐Anna Trapotsi Jasper van Lopik Gregory J. Hannon Benjamin Czech Nicholson Susanne Bornelöv

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Abstract

PIWI-interacting RNAs (piRNAs) are a class of small non-coding RNAs that are essential for transposon control in animal gonads. In

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Cite This Study

Trapotsi et al. (2024) studied this question.

synapsesocial.com/papers/68e61c93b6db6435875aeb19 https://doi.org/10.1093/nargab/lqae119

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Synapse has enriched 5 closely related papers on similar clinical questions. Consider them for comparative context:

1FlaHMM: unistrand<i>flamenco</i>-like piRNA cluster prediction in<i>Drosophila</i>species using hidden Markov models2024
2Traffic Jam activates the<i>Flamenco</i>piRNA cluster locus and the Piwi pathway to ensure transposon silencing and<i>Drosophila</i>fertility2024 · 1 citations
3<i>Flamenco</i> plasticity tunes somatic piRNAs, rewiring host isoforms and opening a route to heritable transposon spread2025
4Annotation of piRNA source loci in the genome of non-model insects2024
5Molecular insights into the <i>Drosophila</i> piRNA pathway via systematic ReLo protein interaction screening and structure prediction2025 · 5 citations