Proteolysis-assisted cyclization facilitates site-centric target deconvolution of isothiocyanates

Abstract Isothiocyanates (ITCs) are a unique class of electrophilic natural products that exert biological effects by reacting with proteinous cysteines to generate thionoacyl adducts. However, the identification of ITCs’ target sites is still an unmet task due to the high lability of such adducts. Here, we report an unexpected chemistry through which the ITC-protein adduct forms a stable N-terminal dihydrothiazole peptide adduct during proteolysis. This proteolysis-assisted cyclization (PAC) reaction can be harnessed for developing affinity-based and activity-based chemoproteomic methods to site-specifically profile targets of ITCs. Applying these methods not only add further complexity to the known poly-pharmacological landscape sulforaphane, the most studied ITC, but also permits expanding the ligandable cysteinome with a 55-member library of structurally diversified ITC-based fragments. Given the promising chemo-preventive and therapeutic effects of ITCs, the PAC-based chemoproteomic platform may lay the groundwork for elucidating their mechanisms of action and ultimately diversify cysteine targetability for drug discovery.