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February 21, 2024ACS Catalysis88 citations

Dynamic Docking-Assisted Engineering of Hydrolases for Efficient PET Depolymerization

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YZYi ZhengQLQingbin LiPLPan Liu

Key Points

  • Engineered leaf-branch-compost cutinase degraded over 90% of postconsumer PET waste into monomers in 3.3 hours at 78 °C, yielding over 99% terminal products.
  • Computational analysis based on dynamic docking evaluated ligand affinity energy across protein conformations to guide three rounds of rational protein engineering.
  • Structural analysis reveals enhanced catalytic performance generating terephthalic acid and ethylene glycol, representing the fastest reported bioreactor PET depolymerization.

Abstract

Poly(ethylene terephthalate) (PET) is the most abundant polyester plastic and is causing serious environmental pollution. Rapid biological depolymerization of PET waste at a large scale requires powerful engineered enzymes with excellent performance. Here, we designed a computational strategy to analyze the ligand affinity energy of enzymes to PET chains by molecular docking with the dynamic protein conformations, named affinity analysis based on dynamic docking (ADD). After three rounds of protein engineering assisted by ADD, we drastically enhanced the PET-depolymerizing activity of leaf-branch-compost cutinase (LCC). The best variant LCC-A2 depolymerized >90% of the pretreated, postconsumer PET waste into corresponding monomers within 3.3 h at 78 °C, and over 99% of the products was terminal depolymerization products (terephthalic acid and ethylene glycol), representing the fastest PET depolymerization rate reported to date in the bioreactor under optimal condition. Structural analysis revealed interesting features that improved the ligand affinity and catalytic performance. In conclusion, the proposed strategy and engineered variants represent a substantial advancement of the biological circular economy for PET.

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Cite This Study

Zheng et al. (2024) studied this question.

synapsesocial.com/papers/68e78329b6db6435876f5dbfhttps://doi.org/10.1021/acscatal.4c00400
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