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October 9, 2025Advanced Science17 citationsOpen Access

Spatial Transcriptomics and snRNA‐seq Expose CAF Niches Orchestrating Dual Stromal‐Immune Barriers in Hepatocellular Carcinoma

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YLYingxue LiCHChangxiang HuanHSHaoting Sun

Key Points

  • This analysis reveals that hypoxic metabolic myofibroblasts create barriers that physically exclude CD8⁺ T cells, promoting immunosuppression.
  • In hepatocellular carcinoma patients, increased POSTN expression correlates with reduced progression-free survival and resistance to immunotherapy.
  • The study employs single-nucleus RNA sequencing and spatial transcriptomics to identify key cellular populations and their spatial organization in tumors.
  • The findings establish cancer-associated fibroblasts as crucial modulators of the tumor microenvironment, impacting therapeutic efficacy.

Abstract

Abstract Hepatocellular carcinoma (HCC) exhibits profound spatial heterogeneity driving therapeutic resistance, while the role of cancer‐associated fibroblasts (CAFs) in orchestrating immunosuppressive niches remains incompletely defined. This study integrates single‐nucleus RNA sequencing (snRNA‐seq) and spatial transcriptomics (stRNA‐seq) to map the cellular and molecular landscape of HCC. snRNA‐seq identifies key cell populations—including fibroblasts, TNK cells, and endothelial cells—using canonical marker genes. Spatial transcriptomics maps gene expression across tumor regions (core, invasive front, stroma) via the robust cell type decomposition (RCTD) algorithm. Immunofluorescence validates collagen deposition and POSTN spatial distribution, confirming T‐cell exclusion patterns. The analysis identifies hypoxic metabolic myofibroblasts (hmmyCAFs) as central regulators of the tumor microenvironment. hmmyCAFs enrich at the invasive front, forming collagen‐rich barriers that physically exclude CD8⁺ T cells. Simultaneously, they secrete POSTN to suppress immune checkpoint signaling and drive hypoxia‐mediated glycolytic reprogramming of T‐cell metabolism. Clinically, hmmyCAF activity and POSTN expression correlate with reduced progression‐free survival and immunotherapy resistance. This multimodal study defines hmmyCAFs as triple architects of physical immunosuppression, molecular regulation, and metabolic remodeling. By linking collagen remodeling, POSTN‐mediated checkpoint inhibition, and hypoxia‐driven metabolic reprogramming to clinical outcomes, hmmyCAFs and POSTN may serve as potential indicators for evaluating the efficacy of immunotherapy in HCC.

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Cite This Study

Li et al. (2025) studied this question.

synapsesocial.com/papers/68e79cf2ed88661f66c2e09fhttps://doi.org/10.1002/advs.202514661
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