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October 17, 2025The ISME Journal5 citationsOpen Access

Bacterial Volatile Organic Compound Specialists in the Phycosphere

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VPVaishnavi G. PadakiXMXavier MayaliPWPeter Weber

Key Points

  • Diatom gross carbon production increased by up to 29% with volatile organic compound consumers present.
  • In co-cultures with bacteria, between 1 and 59 m/z signals were observed to be depleted, indicating VOC consumption.
  • Marinobacter and Roseibium, two key consumers of volatile organic compounds, possessed more oxidation proteins and were associated with the diatom.
  • The study utilized nanoscale secondary ion mass spectrometry and stable isotope labeling to confirm carbon incorporation from VOCs.

Abstract

Abstract Labile dissolved organic carbon in the surface oceans accounts for ~¼ of carbon produced through photosynthesis and turns over on average every three days, fueling one of the largest engines of microbial heterotrophic production on the planet. Volatile organic compounds are poorly constrained components of dissolved organic carbon. Here, we detected 72 m/z signals, corresponding to unique volatile organic compounds, including petroleum hydrocarbons, totaling approximately 18.5 nM in the culture medium of a model diatom. In five cocultures with bacteria adapted to grow with this diatom, 1 to 59 m/z signals were depleted. Two of the most active volatile organic compound consumers, Marinobacter and Roseibium, contained more genes encoding volatile organic compound oxidation proteins, and attached to the diatom, suggesting volatile organic compound specialism. With nanoscale secondary ion mass spectrometry and stable isotope labeling, we confirmed that Marinobacter incorporated carbon from benzene, one of the depleted m/z signals detected in the co-culture. Diatom gross carbon production increased by up to 29% in the presence of volatile organic compound consumers, indicating that volatile organic compound consumption by heterotrophic bacteria in the phycosphere – a region of rapid organic carbon oxidation that surrounds phytoplankton cells – could impact global rates of gross primary production.

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Cite This Study

Padaki et al. (2025) studied this question.

synapsesocial.com/papers/68f25c913dc7eb0776cbc154https://doi.org/10.1093/ismejo/wraf229
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