Report implements a web application to enhance Salmonella surveillance in One Health, suggesting improved data management and validation methods.
In specific contract No 4 issued under the framework agreement OC/EFSA/MESE/2023/03, EFSA requested Open Analytics NV to reproduce the Salmonella chapter from the European Union One Health – Zoonoses Report Union Summary Report in R Markdown and implement a web application to manage the R Markdown chapters and generate a Word report from it. The R Markdown is parametrized, tables and figures have been reproduced where applicable. The online tool is based on the R package rmdUI, developed by Open Analytics NV. This package allows users to create versions of the report, load chapters in the online tool, edit (text) paragraphs and finally export the full report to a Word document. Additionally, the online tool provides functions to run a quick data validation when uploading new datafiles in an admin tab with restricted access.
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Schenk et al. (2025) studied this question.
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