PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
December 8, 2025Proceedings of the National Academy of Sciences7 citationsOpen Access

Deciphering guanidine assimilation and riboswitch-based gene regulation in cyanobacteria for synthetic biology applications

View Full Paper
BABihter AvşarHHHannes HalpickRSRosalie Schaale

Key Points

  • This research examines the mechanisms of guanidine assimilation in cyanobacteria and the role of riboswitches in gene regulation.
  • Investigated guanidine assimilation via guanidine hydrolases in cyanobacteria.
  • Analyzed expression of the gdmH gene under nitrogen limitation regulated by NtcA.
  • Examined the role of ABC transporter genes in guanidine uptake and growth.
  • Demonstrated high-affinity binding of guanidine to a guanidine-I riboswitch within the gdmH 5'-UTR.
  • Implemented various promoters to control heterologous gene expression in cyanobacteria.
  • Guanidine assimilation enables cyanobacteria to utilize guanidine as a nitrogen source.
  • GdmH gene expression increases under nitrogen limitation, driven by the transcription factor NtcA.
  • Disruption of ABC transporter genes gimA or gimB affects growth on low guanidine concentrations.
  • Guanidine riboswitch allows for the titratable control of gene expression in cyanobacteria.

Abstract

Guanidine is well known as a denaturing agent. However, recent studies have demonstrated both the widespread synthesis of guanidine, e.g., in plants and mammals, as well as the widespread occurrence of guanidine metabolism in bacteria, suggesting a broader biological role. Here, we provide insights into guanidine assimilation via guanidine hydrolases (GdmH) in cyanobacteria. The gdmH gene is widespread among cyanobacteria and enables growth on guanidine as the sole nitrogen source. Consistent with this, gdmH gene expression increased under nitrogen limitation, regulated by the transcription factor NtcA. However, guanidine is toxic above 5 mM, necessitating GdmH activity and adaptive mutations activating the multidrug efflux system PrqA. The gdmH gene is frequently colocalized with ABC transporter genes (named gimABC ), which are driven by an additional NtcA-regulated promoter. The corresponding substrate-binding protein GimA showed high affinity to guanidine. Consistent with a high affinity import system, disruption of genes gimA or gimB impaired guanidine-dependent growth of Synechocystis sp. PCC 6803 at low concentrations. However, in presence of >1 mM guanidine, these mutants grew like wildtype, suggesting the existence of additional uptake mechanisms for guanidine. We also demonstrate the high-affinity binding of guanidine to a previously described, conserved RNA motif located within the gdmH 5’-untranslated region, validating it as a guanidine-I riboswitch. By combining it with various promoters, we achieved precise, titratable control of heterologous gene expression in cyanobacteria in vivo. Our findings establish guanidine assimilation as an integral element of cyanobacterial nitrogen metabolism and highlight guanidine riboswitches as valuable tools for synthetic biology.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Avşar et al. (2025) studied this question.

synapsesocial.com/papers/693624d74fa91c937236d14ahttps://doi.org/10.1073/pnas.2519335122
Ask AI
Helpful
Bookmark
Share
View Full Paper