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February 2, 2026Journal of Agricultural and Food Chemistry2 citations

Efficacy of Ipflufenoquin against Strawberry Gray Mold: Insights from AlphaFold- Based Structural Modeling and Genome-Wide Transcriptomic Analysis

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JJJiyoon JeonDSDoeun SonHJHyeong-Rok Jang

Key Points

  • This research aims to assess the efficacy of ipflufenoquin against gray mold caused by Botrytis cinerea and explore its molecular interactions and effects.
  • Evaluated ipflufenoquin's efficacy in both in vitro and greenhouse trials.
  • Used structural modeling with AlphaFold2 to assess binding interactions with DHODH.
  • Conducted RNA-seq analysis to examine gene expression changes post-treatment.
  • Ipflufenoquin showed high sensitivity to Botrytis cinerea and effectiveness against various fungal pathogens.
  • Field trials confirmed strong control over gray mold, including resistant strains.
  • Treatment altered the fungal community, promoting less sensitive genera such as Cladosporium and Rhizopus.
  • RNA-seq revealed suppression of primary metabolic pathways and up-regulation of detoxification genes.

Abstract

Gray mold caused by Botrytis cinerea significantly threatens strawberry production. This study evaluated the efficacy of ipflufenoquin, a novel dihydroorotate dehydrogenase (DHODH) inhibitor, against fungal pathogens isolated from Korean strawberry fields in 2023. Ipflufenoquin demonstrated a high in vitro sensitivity to B. cinerea and broad activity against other pathogens. Fruit and greenhouse trials confirmed its robust control of gray mold, including strains resistant to multiple fungicide classes. However, treatment shifted the fungal community, promoting less sensitive genera, such as Cladosporium and Rhizopus. Structural modeling with AlphaFold2 and molecular docking confirmed that ipflufenoquin binds to the quinone binding tunnel of DHODH, correlating binding affinity with susceptibility. Additionally, RNA-seq analysis revealed that ipflufenoquin suppresses primary metabolic pathways while triggering a robust stress response, up-regulating detoxification and efflux transporter genes. This integrated study confirms the efficacy of ipflufenoquin against gray mold and elucidates its molecular impacts, offering essential data for sustainable management strategies.

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Cite This Study

Jeon et al. (2026) studied this question.

synapsesocial.com/papers/6980ff49c1c9540dea81236chttps://doi.org/10.1021/acs.jafc.5c14085
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