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March 3, 2026Cell Genomics6 citationsOpen Access

CRISPR activation screens map the genomic landscape of cancer glycome remodeling

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JDJohn W. DalyLPLidia PiatnitcaMAMohammed Al-Seragi

Key Points

  • Expression of Siglec-binding glycans is controlled by competition between catalytic genes.
  • Key metrics include the role of α2-3 sialylation and GlcNAcylation in glycan expression regulation.
  • Gain-of-function CRISPR activation screens mapped genetic pathways involved in cancer glycome remodeling.
  • The identification of GAL3ST4 highlights potential targets for enhancing immune responses against glioma.

Abstract

Many cancers upregulate the expression of sialic acid-containing glycans. These oligosaccharides engage inhibitory sialic acid-binding immunoglobulin-like lectin (Siglec) receptors on immune cells, allowing cancer cells to evade immune surveillance. The genetic mechanisms underlying this process remain poorly defined. In this study, we performed gain-of-function CRISPR activation (CRISPRa) screens to define genetic pathways that regulate expression of Siglec-binding glycans. We show that Siglec ligand expression is controlled through genetic competition between genes that catalyze α2-3 sialylation and GlcNAcylation of galactose residues. Cancer glycome remodeling is also aided by the overexpression of "professional ligands" that facilitate Siglec-glycan binding. Notably, we also find that expression of the CD24 gene is genetically dispensable for cell surface binding of the inhibitory receptor Siglec-10. Finally, we identify the sulfotransferase enzyme GAL3ST4 as a potential driver of immune evasion in glioma cells. Our study provides a unique genomic atlas of cancer-associated glycosylation and identifies immediately actionable targets for cancer immunotherapy.

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Cite This Study

Daly et al. (2026) studied this question.

synapsesocial.com/papers/69a75cd7c6e9836116a260a1https://doi.org/10.1016/j.xgen.2026.101139
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