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March 10, 2026International Journal of Genomics0 citationsOpen Access

Single‐Cell Transcriptomics Reveals Dynamic Cellular Interactions and Molecular Mechanisms in Myocardial Infarction Recovery

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JZJianfeng ZhaoJGJunhui GongCZCunzhi Zhu

Key Result

Activation of the MIF signaling pathway and macrophages as key orchestrators drive the transition from inflammation to repair post-myocardial infarction.

Key Points

  • This study aims to understand the cellular and molecular mechanisms involved in myocardial infarction recovery through single-cell analysis.
  • Conducted single-cell RNA sequencing on cardiac tissues post-myocardial infarction.
  • Analyzed different time points and utilized controls including gene knockout and healthy samples.
  • Employed dimension reduction techniques like UMAP and t-SNE for data visualization.
  • Performed pseudotime trajectory and cell communication network analyses.
  • Identified diverse cell types, including fibroblasts and macrophages, involved in cardiac repair.
  • Revealed a transition from inflammatory to reparative cellular phases post-injury.
  • Pinpointed the MIF signaling pathway as crucial for cardiac repair mechanisms.
  • Highlighted macrophages as central orchestrators in the repair process.

Structured PICO

P
Population
Cardiac tissues from different time points post-myocardial infarction, gene knockout (ChrisKO) models, and healthy control groups
C
Comparator
Healthy control groups
O
Outcome
Cellular and molecular dynamics, including cell communication networks and gene expression patterns during post-MI repair

Single-cell transcriptomics reveals that macrophages and the MIF signaling pathway are central to the dynamic cellular transition from inflammation to tissue repair following myocardial infarction.

Abstract

Background Repair and remodeling following myocardial infarction (MI) are complex processes with a wide array of cellular and molecular mechanisms; however, the cell source mediating repair is still poorly understood in terms of heterogeneity and temporal dynamics. Methods We performed a single‐cell RNA sequencing (scRNA‐seq) analysis of cardiac tissues from different time points post‐MI, as well as in gene knockout (ChrisKO) and health control groups. The data were mined by UMAP and t‐SNE dimension reduction visualization, pseudotime trajectory analysis, cell communication network analysis, and gene expression pattern cluster. Results A collection of cell types contributing to cardiac repair was identified, including fibroblasts, macrophages, endothelial cells, and cardiomyocytes that each expressed gene markers and showed temporal distributions associated with distinct injury phases. Pseudotime trajectory analysis identified a continuous change in cellular state from inflammatory to reparative phase, with immune cells in early stages and tissue repair cells at latter stages. The activation of macrophage migration inhibitory factor (MIF) signaling pathway is highly involved in repair after MI, where chemokine‐secreting cells and cardiac fibroblasts act as major MIF signal sources. Network analysis of the intercellular communication revealed that macrophages are key orchestrators of repair. When analyzing branch‐specific gene expression, we found that several important regulatory factors including Atpdv1h, Lypla1, Mrpl15, Tcea1, Apoa, Cldn1, Dpep1, and Map had changing trends at different phases during regeneration. Conclusion Our study profiled a panoramic landscape of cellular and molecular dynamics after MI at single‐cell resolution, demonstrating key cell communication networks and regulatory genes that present novel targets for developing therapeutic strategy toward cardiac repair.

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Cite This Study

Zhao et al. (2026) studied this question. Activation of the MIF signaling pathway and macrophages as key orchestrators drive the transition from inflammation to repair post-myocardial infarction.

synapsesocial.com/papers/69af94fa70916d39fea4c1aehttps://doi.org/10.1155/ijog/4888573
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