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March 13, 2026Nature Communications2 citationsOpen Access

A meta learning and task adaptive approach for drug target affinity prediction

MWMengxuan WanYZYanpeng ZhaoYZYixin Zhang

Key Points

  • To improve drug-target affinity prediction using a meta-learning framework suitable for limited training data.
  • Developed the AdaMBind model based on a meta-learning framework.
  • Implemented a dynamic 'easy-to-hard' task scheduling mechanism for enhanced training.
  • Conducted experiments on three benchmark datasets to evaluate performance against baseline models.
  • AdaMBind outperformed 8 baseline models in predicting affinity for unseen targets.
  • The model effectively identified high-affinity compounds under stringent data constraints.
  • Demonstrated success in identifying candidate compounds for FLT3 inhibitors in acute myeloid leukemia.

Abstract

Accurate and robust prediction of drug-target affinity (DTA) plays a critical role in drug discovery. While deep learning has advanced DTA prediction, existing methods struggle with limited training data and poor generalization. In this study, we propose AdaMBind, a novel DTA prediction model based on meta-learning framework with an adaptive task module designed for low-data scenarios. It employs a dynamic "easy-to-hard" task scheduling mechanism to enhance training efficiency and robustness. Experimental results on three benchmark datasets demonstrate that AdaMBind outperforms 8 baseline models in predicting affinity for unseen targets, particularly under few-shot conditions. Under stringent data constraints, the model successfully identifies high-affinity compounds for ESR and TP53, achieving outstanding virtual screening performance. Furthermore, when applied to inhibitor discovery against FLT3 for acute myeloid leukemia, AdaMBind successfully identified candidate compounds with potent inhibitory activity, as verified by preliminary experimental assays. In summary, AdaMBind provides a robust framework for few-shot DTA prediction.

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Cite This Study

Wan et al. (2026) studied this question.

synapsesocial.com/papers/69b3ab2902a1e69014ccbd1bhttps://doi.org/10.1038/s41467-026-70554-5
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