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March 21, 2026Nature Immunology7 citationsOpen Access

Distinct origins and niches determine the cellular responsiveness of CNS macrophages after repopulation

MFMaximilian FliegaufDLDamien LevardFCFrancesco Cardamone

Key Points

  • This research investigates how distinct origins and niches affect the responsiveness of CNS macrophages after repopulation.
  • Performed multilineage fate mapping to trace origins of macrophages.
  • Utilized multiomic profiling to analyze transcriptomic and epigenetic differences.
  • Employed high-resolution imaging for observed macrophage behavior after depletion.
  • Identified that sdCAMs do not autonomously repopulate like microglia.
  • Discovered sdCAMs' transient accessibility to CCR2+Ly6C+ monocyte engraftment.
  • Found that monocyte-derived sdCAMs maintain differences from embryo-derived sdCAMs.

Abstract

Nonparenchymal central nervous system (CNS)-associated macrophages (CAMs) mediate immune responses at brain boundaries. Perivascular and leptomeningeal CAMs are collectively termed subdural CAMs (sdCAMs). Both sdCAMs and juxtaneuronal microglia are derived from embryonic yolk sac precursors, long-living and maintain their populations through self-renewal. Following depletion, microglia autonomously repopulate from single surviving cells. In contrast, the course of sdCAM repopulation remains poorly understood. Here, by combining multilineage fate mapping, multiomic profiling and high-resolution imaging, we demonstrate divergent repopulation dynamics between sdCAMs and microglia. Unlike microglia, sdCAMs do not renew cell-autonomously, but become transiently accessible to CCR2+Ly6C+ monocyte engraftment after niche induction in an integrin-dependent manner. Moreover, replenished monocyte-derived sdCAMs remain transcriptomically, epigenetically and functionally distinct from their embryo-derived counterparts. Finally, we present a protocol enabling selective exchange of sdCAMs, modulating disease response without functionally affecting microglia. These new insights into CNS immune biology suggest new therapeutic avenues for neuroinflammatory and neurodegenerative diseases.

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Cite This Study

Fliegauf et al. (2026) studied this question.

synapsesocial.com/papers/69be36416e48c4981c675125https://doi.org/10.1038/s41590-026-02457-y
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