PulseExploreJournal ClubDebatesTrendingResearchersJournals
Instagram
HomeExploreJournal ClubTrending
Synapse
⌘+K
Synapse
March 29, 2026Scientific Reports3 citationsOpen Access

A physics-informed machine learning framework for predicting and mitigating doxorubicin nanocarrier toxicity in normal cells

ARAbbas RahdarSFSonia Fathi-karkan

Key Result

A Physics-Informed Neural Network accurately predicted doxorubicin nanocarrier cytotoxicity (R² = 0.89) and identified an optimal design space of 120-150 nm size and -25 to -35 mV zeta potential.

Key Points

  • The aim is to predict and optimize the cytotoxicity of doxorubicin-loaded nanocarriers in normal cells using a hybrid computational framework.
  • Compiled a dataset of 77 unique nanocomposite systems with physicochemical and biological data.
  • Utilized classical and physics-informed machine learning models to analyze the toxicity.
  • Applied Bayesian optimization to identify optimal nanocarrier features for safety.
  • The physics-informed model outperformed conventional ML methods with R2 of 0.89 and RMSE of 0.14.
  • Key features influencing toxicity were identified as zeta potential and size.
  • Experimental validation indicated prediction errors less than 3%, confirming model accuracy.

Structured PICO

P
Population
77 unique doxorubicin (DOX)-loaded nanocomposite formulations evaluated on normal cell lines (e.g., L929 mouse fibroblasts, HUVECs, MCF-10A, primary cardiomyocytes)
I
Intervention
Physics-Informed Neural Network (PINN) modeling incorporating domain knowledge such as drug release kinetics (Higuchi model), colloidal stability constraints, and diffusion limitations
C
Comparator
Conventional machine learning methods (e.g., XGBoost, Random Forest, Multilayer Perceptron)
O
Outcome
Normal cell viability (harmonized on a 0-100% scale derived exclusively from in vitro assays)safety

A physics-informed machine learning framework successfully predicts doxorubicin nanocarrier cytotoxicity, identifying optimal physicochemical parameters to minimize off-target effects like cardiotoxicity.

Limitations

  • Feature space does not include molecular or compositional descriptors such as surface functionalization, polymer chemistry, targeting ligands, hydrophobicity, or Hansen solubility parameters.
  • Limited total sample size (n=77)
  • Omission of molecular or compositional descriptors such as surface functionalization, polymer chemistry, targeting ligands, and hydrophobicity
  • Reliance on the Higuchi model as a soft physical prior which may not capture all release mechanisms

Abstract

The clinical utility of doxorubicin (DOX) has been widely hampered by a dose-dependent systemic toxicity, in particular cardiotoxicity. While nanocarrier systems represent encouraging solutions, their optimization is not an easy task due to complex, nonlinear relationships between physicochemical properties and biological outcomes. This study presents a hybrid computational framework that incorporates both classical machine learning and physics-informed machine learning to predict and optimize DOX-loaded nanocarrier cytotoxicity toward normal cells. For this purpose, we compiled an extensive dataset of 77 unique nanocomposite systems with their detailed physicochemical characterizations and biological evaluations. Several ML models were trained and compared, whereas a Physics-Informed Neural Network implemented domain knowledge such as drug release kinetics, colloidal stability constraints, and diffusion limitations. The proposed PINN model showed better predictive capability (R2 = 0.89, RMSE = 0.14) compared to conventional ML methods. SHAP analysis revealed that zeta potential and size are the most governing features on cytotoxicity. Bayesian optimization revealed an optimal design space: sizes of 120–150 nm, zeta potentials between − 25 and − 35 mV, loading efficiency of 5–10%, and encapsulation efficiency > 85%. Experimental validation on independent studies confirmed the model’s accuracy with prediction errors < 3%. The proposed PIML framework offers a robust yet interpretable method for rational nanocarrier design that significantly improves the development of safer chemotherapeutic delivery systems by reducing the reliance on empirical optimizations.

Ask AI
Helpful
Bookmark
Share
View Full Paper

Cite This Study

Rahdar et al. (2026) studied Doxorubicin nanocarrier toxicity (n=77). Physics-Informed Neural Network (PINN) vs. Conventional machine learning methods was evaluated on Prediction accuracy of nanocarrier cytotoxicity (R²). A Physics-Informed Neural Network accurately predicted doxorubicin nanocarrier cytotoxicity (R² = 0.89) and identified an optimal design space of 120-150 nm size and -25 to -35 mV zeta potential.

synapsesocial.com/papers/69c8c1f4de0f0f753b39c26ahttps://doi.org/10.1038/s41598-026-42209-4
Ask AI
Helpful
Bookmark
Share
View Full Paper