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April 1, 2026EBioMedicine2 citationsOpen Access

Large language models for risk-of-bias assessment in randomised clinical trials—a comparative validation study

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LNLauri NyrhiVPVille PonkilainenJLJuho Laaksonen

Key Points

  • This study aims to evaluate the accuracy and consistency of large language models in assessing risk of bias in randomised clinical trials.
  • Conducted a preregistered comparative validation study from March 11 to May 19, 2025.
  • Evaluated four large language models using full-text articles and protocols of randomised clinical trials.
  • Analyzed two datasets of 100 RCTs each from Cochrane reviews and high-impact journals.
  • Compared model performance against established human risk of bias judgements.
  • Interobserver agreement for risk of bias in Cochrane RCTs (RoB 1) ranged from κ 0.27 to κ 0.39 among models.
  • Agreement for risk of bias in high-impact journals (RoB 2) was lower, from κ 0.06 to κ 0.13.
  • Diagnostic accuracy showed sensitivity from 0.05 to 0.55 and specificity from 0.78 to 0.99 for the models.
  • Models tended to over-flag concerns, with limited efficacy for fully autonomous risk-of-bias assessments.

Abstract

BACKGROUND: Large language models (LLMs) are emerging tools for evidence synthesis. Risk of bias (RoB) assessment of trials remains an essential but time-consuming step inconsistent even amongst experts. Early LLM studies showed mixed reliability. Advances in reasoning-enabled models warrant evaluation of their accuracy and consistency for RoB screening across randomised trials to reduce reviewer workload. METHODS: We conducted a preregistered comparative validation study (March 11-May 19, 2025) of four LLMs-ChatGPT o3, DeepSeek v3, Google Gemini Flash 2.0, and Grok 3-prompted with full-text randomised clinical trial articles and protocols. Two corpora were analysed: 100 RCTs from recent Cochrane reviews (RoB 1) and 100 RCTs from meta-analyses in high-impact journals (RoB 2). The reference standard was published human RoB judgements. The primary outcome was interobserver reliability (Cohen κ, 95% CI); secondary outcomes were intraobserver agreement and diagnostic accuracy (sensitivity, specificity, predictive values, F FINDINGS: For RoB 1, interobserver agreement ranged from κ 0.0.27 (95% CI 0.07-0.46) with Gemini Flash 2.0 to κ 0.39 (0.20-0.59) with DeepSeek v3. For RoB 2, agreement was lower, from κ 0.06 (-0.07 to 0.18) with ChatGPT o3 to κ 0.13 (-0.04 to 0.31) with Gemini. Diagnostic performance was limited with sensitivity ranging 0.05-0.55, specificity 0.78-0.99, PPV 0.31-0.50, and NPV 0.48-0.61 across models, with models consistently over-flagging concerns. INTERPRETATION: None of the evaluated LLMs were sufficiently reliable for fully autonomous RoB assessment. DeepSeek v3 and ChatGPT o3 approximated human performance best on RoB 1, but RoB 2 rule-in and rule-out performance remained modest. Current use should be supervised, with possible application of LLMs for triage or as a second assessor. Major improvements in protocol retrieval, task-specific tuning, and calibrated thresholds, prospectively validated, are needed for safe stand-alone deployment. FUNDING: This study received no financial support.

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Nyrhi et al. (2026) studied this question.

synapsesocial.com/papers/69ccb55116edfba7beb8748bhttps://doi.org/10.1016/j.ebiom.2026.106238
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