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April 3, 20260 citationsOpen Access

Systematic evaluation and guidelines for segment anything model in surgical video analysis

CYC. Z. YuanUniversité Paris-SudJJJ. S. JiangArgonne National LaboratoryKYKunyi YangShanghai Jiao Tong University

Key Points

  • This research aims to evaluate the zero-shot capability of the SAM2 model in surgical video analysis and assess its performance across various surgical datasets.
  • Conducted a systematic evaluation of SAM2 across 9 surgical datasets encompassing 17 types of surgeries.
  • Analyzed various prompting strategies, including points, boxes, and masks.
  • Evaluated fine-tuning approaches, both dense and sparse.
  • Assessed model robustness against surgical challenges like tissue deformation and instrument variability.
  • SAM2 displayed notable adaptability in structured scenarios including instrument and multi-organ segmentation.
  • Performance showed variability in dynamic surgical conditions, indicating challenges with temporal coherence.
  • Identified gaps in addressing domain-specific artifacts during complex surgical procedures.

Abstract

Surgical video segmentation is critical for AI to interpret spatial-temporal dynamics in surgery, yet model performance is constrained by limited annotated data. The SAM2 model, pretrained on natural videos, offers potential for zero-shot surgical segmentation, but its applicability in complex surgical environments, with challenges like tissue deformation and instrument variability, remains unexplored. We present the first comprehensive evaluation of the zero-shot capability of SAM2 in 9 surgical datasets (17 surgery types), covering laparoscopic, endoscopic, and robotic procedures. We analyze various prompting (points, boxes, mask) and finetuning (dense, sparse) strategies, robustness to surgical challenges, and generalization across procedures and anatomies. Key findings reveal that while SAM2 demonstrates notable zero-shot adaptability in structured scenarios (e.g., instrument segmentation, multi-organ segmentation, and scene segmentation), its performance varies under dynamic surgical conditions, highlighting gaps in handling temporal coherence and domain-specific artifacts. These results highlight future pathways to adaptive data-efficient solutions for the surgical data science field.

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Cite This Study

Yuan et al. (2026) studied this question.

synapsesocial.com/papers/69cf5e745a333a821460cd8fhttps://doi.org/10.1038/s44484-025-00002-2
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