Paired biopsies reveal MAPK suppression and immune remodeling in KRAS G12C-mutant colorectal cancer, indicating potential for combination strategies.
Background: Sotorasib, a KRAS G12C inhibitor, plus panitumumab is approved for use in chemorefractory metastatic colorectal cancer (mCRC) . Yet, early effects on the tumor microenvironment (TME) in clinical samples are not well understood. In preclinical models, sotorasib potently suppresses MAPK signaling and promotes a pro-inflammatory TME characterized by CD8+ T cell infiltration and increased IFN-γ activity, implicating adaptive immunity in tumor control. We investigated if these pharmacodynamic and immunologic effects are observed clinically in patients (pts) treated with sotorasib plus panitumumab. Methods: Paired biopsies before and after 3-4 weeks of sotorasib plus panitumumab treatment were available from 12 pts in Cohort A of CodeBreaK 101 (NCT04185883). We performed whole-transcriptome RNA sequencing (n=12), pERK immunohistochemistry (n=8), spatial analysis of H&E-stained sections using digital pathology (n=10), and single-cell spatial transcriptomics (n=2). Analyses were primarily descriptive, and Wilcoxon signed-rank tests and summary statistics were used to characterize differences between paired biopsies. Results: Transcriptomic profiling revealed robust suppression of MAPK signaling, shown by an approximate 4-fold reduction in median MAPK Pathway Activity Score with consistent downregulation of cell cycle-related genes. Key MAPK targets were downregulated, including ETV4 (−6.9-fold), EPHA2 (−2.8-fold), and DUSP6 (−2.0-fold), while EPHA4 was largely unchanged. pERK immunohistochemistry showed an approximately 1.8-fold reduction in H-score and a 2.0-fold decrease in proportion of pERK+ tumor nuclei among profiled pts, consistent with effective MAPK pathway inhibition. Immune activation was reflected by a 1.9-fold increase in the Tumor Inflammation Signature score and upregulation of chemokines and antigen-presentation genes (CXCL9, CCL5, HLA-DPA1). Digital pathology analysis of H&E images showed increased immune cell clustering in the TME, mirroring immune remodeling observed in RNA-seq data. Single-cell spatial confirmed presence of CXCR6+ CD8+ T cells and macrophage derived CXCL10 in the tumor and associated stroma suggesting cytotoxic T cell recruitment and activation. Comprehensive pathway analysis showed upregulation of PI3K-AKT, HER2, and TGFβ signaling in some pts, suggesting compensatory survival mechanisms and a potential rationale for combinatorial strategies. Conclusion: Paired biopsy analysis revealed potent MAPK inhibition and immune remodeling, providing mechanistic insight into the role of the immune TME in early response to sotorasib plus panitumumab and underscoring opportunities for rational combination strategies in mCRC. Citation Format: David Hong, Lata Mukundan, Abraham Anderson, Emily Chan, Dorothy French, Linnea Haeggblom, Daniel Lu, Toshiki Masuishi, Rona Yaeger, Yuliya Katlinskaya. Immune and pharmacodynamic effects of sotorasib plus panitumumab in KRAS G12C-mutant colorectal cancer: Paired biopsy results from CodeBreaK 101 [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 2929.
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