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April 7, 2026Journal of Cancer0 citationsOpen Access

An integrated bulk and single-cell transcriptomic analysis reveals stemness-driven immune regulation and therapeutic vulnerability in colorectal cancer

ICI-Hung ChenKCKai-Fu ChangCCChien-Cheng Chao

Key Points

  • This research aims to investigate the impact of tumor stemness on immune responses and treatment outcomes in colorectal cancer.
  • Developed a stemness-based risk model using bulk transcriptomic data from The Cancer Genome Atlas.
  • Evaluated prognostic relevance through integrative analyses regarding overall survival.
  • Analyzed immune infiltration patterns and expression of immune checkpoint-related genes in stemness-high tumors.
  • Conducted single-cell RNA sequencing to localize enhanced stemness and dedifferentiation in malignant epithelial cells.
  • The risk model successfully stratified patients into distinct prognostic groups.
  • The stemness score was an independent predictor of overall survival after adjusting for clinicopathological factors.
  • Stemness-high tumors displayed altered immune infiltration and upregulation of immune checkpoint genes.
  • Low-risk patients in independent immunotherapy cohorts showed improved survival and higher treatment response rates.

Abstract

Tumor stemness is increasingly recognized as a key contributor to tumor heterogeneity, immune regulation, and therapeutic resistance in colorectal cancer (CRC).In this study, we developed a stemness-based risk model using bulk transcriptomic data from The Cancer Genome Atlas and evaluated its prognostic and therapeutic relevance through integrative analyses.The proposed risk score robustly stratified patients into distinct prognostic groups and remained an independent predictor of overall survival after adjustment for clinicopathological variables.Stemness-high tumors exhibited altered immune infiltration patterns and coordinated upregulation of immune checkpoint-related genes.Although the association between stemness score and immune evasion potential was modest, its clinical relevance was supported by validation in independent immunotherapy-treated cohorts, where low-risk patients demonstrated improved survival and higher response rates.Single-cell RNA sequencing (scRNA-seq) analysis further revealed that enhanced stemness and dedifferentiation were predominantly localized within malignant epithelial cells.Together, these findings establish tumor stemness as a central determinant of prognosis, immune regulation, and therapeutic vulnerability in CRC.

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Cite This Study

Chen et al. (2026) studied this question.

synapsesocial.com/papers/69d49f8ab33cc4c35a228052https://doi.org/10.7150/jca.132694
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