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October 16, 2018Nature Communications1,666 citationsOpen Access

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

SMSonya A. MacParlandJLJeff C. LiuXMXue-Zhong Ma

Key Points

  • Map the cellular landscape and immune microenvironment of the human liver at single-cell resolution.
  • Performed single-cell RNA sequencing on 8,444 parenchymal and non-parenchymal cells isolated from fresh hepatic tissue across five human livers (N=5).
  • Characterized cell identities and expression patterns using flow cytometry and immunohistochemical examinations.
  • Identified 20 discrete cell populations, including hepatocytes, endothelial cells, cholangiocytes, and hepatic stellate cells.
  • Mapped the intrahepatic immune compartment, distinguishing B cells, conventional and non-conventional T cells, NK-like cells, and distinct monocyte/macrophage subpopulations.

Abstract

The liver is the largest solid organ in the body and is critical for metabolic and immune functions. However, little is known about the cells that make up the human liver and its immune microenvironment. Here we report a map of the cellular landscape of the human liver using single-cell RNA sequencing. We provide the transcriptional profiles of 8444 parenchymal and non-parenchymal cells obtained from the fractionation of fresh hepatic tissue from five human livers. Using gene expression patterns, flow cytometry, and immunohistochemical examinations, we identify 20 discrete cell populations of hepatocytes, endothelial cells, cholangiocytes, hepatic stellate cells, B cells, conventional and non-conventional T cells, NK-like cells, and distinct intrahepatic monocyte/macrophage populations. Together, our study presents a comprehensive view of the human liver at single-cell resolution that outlines the characteristics of resident cells in the liver, and in particular provides a map of the human hepatic immune microenvironment.

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Cite This Study

MacParland et al. (2018) studied this question.

synapsesocial.com/papers/69d729828a0e2c5879befc06https://doi.org/10.1038/s41467-018-06318-7
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