Pre-calculated protein structure alignments at the RCSB PDB website

October 10, 2010BioinformaticsOpen Access

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Key Points

To implement and integrate automated, pre-calculated protein structure alignments within the RCSB Protein Data Bank website for rapid structural retrieval.
Computed comprehensive pairwise structural alignments across macromolecular entries stored within the RCSB Protein Data Bank repository.
Integrated backend computational pipelines with interactive web-based visualization tools to display structural comparisons.
Provides pre-computed 3D structural alignments on demand, eliminating the computational latency of real-time pairwise calculations.
Enables streamlined exploration of structural similarities, topological features, and evolutionary homology directly through the web portal.

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Bioinformatics report introduces pre-calculated structural alignments in the RCSB PDB, facilitating rapid macromolecular comparisons.

andreas@sdsc.edu; pbourne@ucsd.edu.

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Prlić et al. (2010) studied this question.

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