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March 13, 2004Journal of Chemical Information and Computer Sciences1,116 citations

ESOL:  Estimating Aqueous Solubility Directly from Molecular Structure

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JDJohn Delaney

Key Points

  • To develop a simple, structure-based computational model for estimating aqueous solubility without requiring experimental physical property inputs.
  • Trained a linear regression model using measured aqueous solubility data from 2,874 diverse chemical compounds against nine molecular parameters.
  • Assessed predictive accuracy across three independent validation sets of medicinal and agrochemical-sized compounds against the General Solubility Equation.
  • Identified calculated logP, molecular weight, proportion of aromatic heavy atoms, and count of rotatable bonds as the primary structural predictors of solubility.
  • Predicted aqueous solubility within a factor of 5 to 8 of experimental values across three validation sets, matching the performance of standard empirical equations.

Abstract

This paper describes a simple method for estimating the aqueous solubility (ESOL--Estimated SOLubility) of a compound directly from its structure. The model was derived from a set of 2874 measured solubilities using linear regression against nine molecular properties. The most significant parameter was calculated logP(octanol), followed by molecular weight, proportion of heavy atoms in aromatic systems, and number of rotatable bonds. The model performed consistently well across three validation sets, predicting solubilities within a factor of 5-8 of their measured values, and was competitive with the well-established "General Solubility Equation" for medicinal/agrochemical sized molecules.

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Cite This Study

John Delaney (2004) studied this question.

synapsesocial.com/papers/69da229a00ab073a27837ce5https://doi.org/10.1021/ci034243x
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