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June 1, 2011Journal of Computer-Aided Molecular Design698 citationsOpen Access

Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information

ISIurii SushkoSNSergii NovotarskyiRKRobert Körner

Key Points

  • Introduce the Online Chemical Modeling Environment (OCHEM), an open web-based platform designed to automate and simplify chemical data storage and predictive QSAR/QSPR modeling.
  • Integrated a wiki-style user-contributed database for storing, searching, and verifying experimental chemical measurements.
  • Built a modeling framework supporting molecular descriptor calculation, machine learning algorithms, model validation, and applicability domain assessment.
  • Delivered a publicly accessible online platform linking experimental chemical data with automated predictive modeling workflows.
  • Enabled community-driven contribution, public dissemination, and collaborative validation of chemoinformatics models.

Abstract

The Online Chemical Modeling Environment is a web-based platform that aims to automate and simplify the typical steps required for QSAR modeling. The platform consists of two major subsystems: the database of experimental measurements and the modeling framework. A user-contributed database contains a set of tools for easy input, search and modification of thousands of records. The OCHEM database is based on the wiki principle and focuses primarily on the quality and verifiability of the data. The database is tightly integrated with the modeling framework, which supports all the steps required to create a predictive model: data search, calculation and selection of a vast variety of molecular descriptors, application of machine learning methods, validation, analysis of the model and assessment of the applicability domain. As compared to other similar systems, OCHEM is not intended to re-implement the existing tools or models but rather to invite the original authors to contribute their results, make them publicly available, share them with other users and to become members of the growing research community. Our intention is to make OCHEM a widely used platform to perform the QSPR/QSAR studies online and share it with other users on the Web. The ultimate goal of OCHEM is collecting all possible chemoinformatics tools within one simple, reliable and user-friendly resource. The OCHEM is free for web users and it is available online at http://www.ochem.eu.

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Cite This Study

Sushko et al. (2011) studied this question.

synapsesocial.com/papers/69dd278303ecda3005e52e82https://doi.org/10.1007/s10822-011-9440-2
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