⌘+K

Pulse Explore Communities Researchers Journals

Home Communities Explore

November 2, 2016BioinformaticsOpen Access

Smoldyn: particle-based simulation with rule-based modeling, improved molecular interaction and a library interface

Steven S. Andrews

View Full Paper

Ask AI

Bookmark

Share

No abstract yet

We only have this paper's title and publication details.

Read it at the source→

Ask about this paper

Answers are grounded in this paper and cite their sources.

Ask your own question…

Abstract

steven.s.andrews@gmail.com.

Discussion

No takes yet. Share an insight, caveat, or question.

Cite This Study

Steven S. Andrews (2016) studied this question.

synapsesocial.com/papers/69dd4c69caee84831440c5b8 https://doi.org/10.1093/bioinformatics/btw700

View Full Paper

Ask AI

Bookmark

Share

Keep reading

Synapse has enriched 10 related papers. Consider them for comparative context:

1Accurate particle-based simulation of adsorption, desorption and partial transmissionOriginal Research · 2009 · 84 citations
2Stochastic simulation of chemical reactions with spatial resolution and single molecule detailOriginal Research · 2004 · 526 citations
3Detailed Simulations of Cell Biology with Smoldyn 2.1Original Research · 2010 · 317 citations
4A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formationOriginal Research · 2009 · 80 citations
5Computational reconstitution of spine calcium transients from individual proteinsOriginal Research · 2015 · 101 citations
6BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domainsOriginal Research · 2004 · 424 citations
7Computer-based analysis of the binding steps in protein complex formationOriginal Research · 1997 · 118 citations
8Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systemsOriginal Research · 2013 · 131 citations
9SiSaNA: A Python-based command line interface for Single-Sample Network AnalysisBioinformatics · 2026
10Assessment of LLMs on basic bioinformatics tasks requiring multi-step reasoning and code writingBioinformatics · 2026

More from Bioinformatics

More from Fred Hutch Cancer Center

More from Isaac Newton Institute for Mathematical Sciences