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April 20, 2018Conservation Biology231 citationsOpen Access

Efficacy of extracting indices from large‐scale acoustic recordings to monitor biodiversity

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RBRachel T. BuxtonCarleton CollegeMMMegan F. McKennaNational Oceanic and Atmospheric AdministrationMCMary ClappThe Institute for Bird Populations

Key Points

  • To evaluate the relationship between acoustic indices and the diversity and abundance of biological sounds in large-scale acoustic recordings across terrestrial and marine habitats.
  • Reviewed acoustic-index literature and selected 36 candidate indices for predictive modeling.
  • Gathered audio data across 43 temperate terrestrial and tropical marine sites in the continental United States.
  • Constructed random-forest models using acoustic indices to predict Shannon diversity, acoustic richness, and total biological sound counts.
  • Random-forest models accurately predicted Shannon diversity, richness, and total biological sounds in terrestrial environments (R² ≥ 0.94, MSE ≤ 170.2).
  • Model accuracy was substantially lower for marine soundscapes (R² ≤ 0.40, MSE ≥ 195).
  • Roughness, acoustic activity, and acoustic richness contributed most to predictions, whereas insect, weather, and anthropogenic noise diminished performance.

Abstract

Passive acoustic monitoring could be a powerful way to assess biodiversity across large spatial and temporal scales. However, extracting meaningful information from recordings can be prohibitively time consuming. Acoustic indices (i.e., a mathematical summary of acoustic energy) offer a relatively rapid method for processing acoustic data and are increasingly used to characterize biological communities. We examined the relationship between acoustic indices and the diversity and abundance of biological sounds in recordings. We reviewed the acoustic-index literature and found that over 60 indices have been applied to a range of objectives with varying success. We used 36 of the most indicative indices to develop a predictive model of the diversity of animal sounds in recordings. Acoustic data were collected at 43 sites in temperate terrestrial and tropical marine habitats across the continental United States. For terrestrial recordings, random-forest models with a suite of acoustic indices as covariates predicted Shannon diversity, richness, and total number of biological sounds with high accuracy (R2 ≥ 0.94, mean squared error MSE ≤170.2). Among the indices assessed, roughness, acoustic activity, and acoustic richness contributed most to the predictive ability of models. Performance of index models was negatively affected by insect, weather, and anthropogenic sounds. For marine recordings, random-forest models poorly predicted Shannon diversity, richness, and total number of biological sounds (R2 ≤ 0.40, MSE ≥ 195). Our results suggest that using a combination of relevant acoustic indices in a flexible model can accurately predict the diversity of biological sounds in temperate terrestrial acoustic recordings. Thus, acoustic approaches could be an important contribution to biodiversity monitoring in some habitats.

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Cite This Study

Buxton et al. (2018) studied this question.

synapsesocial.com/papers/69dd687f7808b00a4799da8ahttps://doi.org/10.1111/cobi.13119
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