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April 25, 2026Biosensors and Bioelectronics1 citationsOpen Access

Rapid and sensitive detection of blaKPC and blaNDM in carbapenemase-producing Enterobacterales using a one-pot recombinase polymerase amplification–CRISPR/Cas12a system with modified protospacer adjacent motifs

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LHLee-Sang HyeonJYJi YangSBSongmee Bae

Key Points

  • The aim is to develop a reliable one-pot RPA–CRISPR/Cas12a system for rapid detection of carbapenemase genes bla KPC and bla NDM.
  • Developed an optimized one-pot RPA–CRISPR/Cas12a system for detecting bla KPC and bla NDM.
  • Validated the assay using 44 clinical samples to assess sensitivity and specificity.
  • Integrated the assay into a portable diagnostic device for ease of use.
  • Achieved 100% sensitivity and specificity in clinical sample validation.
  • Detected bla KPC at a limit of 10 -17 M and bla NDM at 10 -16 M within 30 minutes.
  • Streamlined workflow with suboptimal protospacer adjacent motif sequences enhanced detection sensitivity.

Abstract

Carbapenem-resistant Enterobacterales pose a critical global health threat because of their rapid transmission and resistance to last-line antibiotics. To address this threat, rapid and user-friendly point-of-care (POC) detection is essential. Quantitative polymerase chain reaction (qPCR), while providing high sensitivity, relies on expensive equipment and skilled personnel, hindering its practical use in resource-limited settings. Here, we aimed to develop an optimized one-pot RPA–CRISPR/Cas12a (RCCS) system with enhanced diagnostic performance to provide a reliable and user-friendly platform for rapid carbapenemase gene screening in both clinical and resource-limited settings. The developed assay used for the detection of bla KPC and bla NDM genes, which was integrated into a portable diagnostic device. By using suboptimal protospacer adjacent motif sequences, the assay provided a streamlined workflow and substantially enhanced detection sensitivity. This platform achieved a limit of detection of 10 -17 M for bla KPC and 10 -16 M for bla NDM within 30 min. Validation with 44 clinical samples demonstrated that the assay had 100% sensitivity and specificity, matching the effectiveness of qPCR. The one-pot RCCS platform offers a robust and highly-sensitive POC solution for on-site testing.

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Cite This Study

Hyeon et al. (2026) studied this question.

synapsesocial.com/papers/69ec59c688ba6daa22dab6e4https://doi.org/10.1016/j.bios.2026.118725
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