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April 30, 2026Engineering Microbiology3 citationsOpen Access

Prospects and Challenges in Using Engineered Lactic Acid Bacteria in Aquaculture Applications

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XHXiyin HuangXSXiangze SunXDXingya Dong

Key Points

  • This review aims to assess the advancements and challenges in using genetically engineered lactic acid bacteria in aquaculture.
  • Systematic review of engineering strategies for lactic acid bacteria in aquaculture applications.
  • Evaluation of technologies including CRISPR/Cas systems and Red/ET recombination for improving LAB functions.
  • Discussion on the performance of engineered strains compared to wild-type strains in tilapia, shrimp, and shellfish farming.
  • Engineered strains showed superior performance in disease prevention and growth promotion compared to wild-type strains.
  • Developed strains include oral vaccine strains expressing pathogen antigens and antimicrobial peptide-high-yielding strains.
  • Challenges such as plasmid instability and regulatory barriers continue to hinder widespread application.

Abstract

Despite the considerable potential of lactic acid bacteria (LAB) as probiotics, there is a fundamental gap between the functional limitations of wild-type strains and the complex demands of aquaculture. Modular and intelligent engineering strategies are the primary avenues for bridging this gap. This article systematically reviews the strategies and advances in the application of genetically engineered LAB. Technologies, including clustered regularly interspaced short palindromic repeat (CRISPR)/Cas systems, Red/ET recombination, and functional modifications have significantly enhanced the targeted delivery, environmental tolerance, and multiple probiotic functions of LAB, successfully yielding engineered strains such as oral vaccine strains expressing pathogen antigens, antimicrobial peptide-high-yielding antibacterial strains, and nitrite-degrading water-improving strains. These engineered strains have demonstrated superior performance in disease prevention, growth promotion, and environmental remediation compared to wild-type strains in the farming of tilapia, shrimp, and shellfish. However, challenges, such as plasmid instability, biosafety risks, and regulatory barriers, remain unresolved. Future research should focus on multi-omics-guided precision design, development of environmentally responsive genetic circuits, and full-cycle risk assessment, promoting engineered LAB as a core solution for sustainable aquaculture through collaboration across industries, academia, and research.

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Cite This Study

Huang et al. (2026) studied this question.

synapsesocial.com/papers/69f2f0e31e5f7920c6386e73https://doi.org/10.1016/j.engmic.2026.100275
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