Carbon budgets for three autotrophic Australian estuaries: Implications for global estimates of the coastal air‐water CO2 flux

Estuaries are ‘hot spots’ in the global carbon cycle, yet data on carbon dynamics, in particular air‐sea CO 2 fluxes, from autotrophic systems are rare. Estuarine carbon budgets were constructed for three geomorphically distinct warm temperate Australian estuaries over an annual cycle. All three estuaries were net autotrophic, with annual net ecosystem metabolism (NEM) ranging from 8 ± 13.4 molC m −2 yr −1 to 10 ± 14 molC m −2 yr −1 . There was a net flux of CO 2 from the atmosphere to the estuaries of between 0.4 ± 0.6 molC m −2 yr −1 and 2 ± 0.9 molC m −2 yr −1 . Loading of dissolved inorganic carbon (DIC) and dissolved organic carbon (DOC) to the estuaries varied markedly within and between the estuaries, and was directly related to freshwater inflow. While NEM was similar in all three estuaries, the ratio of benthic versus pelagic contributions to NEM differed, with NEM dominated by pelagic production in the river dominated system, benthic production dominating in the intermediate estuary, and equal contributions of benthic and pelagic production in the marine dominated lagoon. All three estuaries exported more organic carbon than was imported, fueled by additional organic carbon supplied by NEM. The estuaries essentially acted as bioreactors, transforming DIC to organic carbon. Burial of organic carbon ranged from 1.2 ± 0.3 molC m −2 yr −1 to 4.4 ± 1.2 molC m −2 yr −1 and represented up to half of NEM. The annual net uptake of atmospheric CO 2 in these systems, along with previous estimates of the global estuarine CO 2 flux being based predominantly on heterotrophic, large river dominated estuarine systems, indicates that the global estimate of the estuarine air‐water CO 2 flux may be over‐estimated due to the lack of studies from autotrophic marine dominated estuaries.