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May 8, 2026Science Advances0 citationsOpen Access

CKS1B is a tumor-intrinsic factor driving CD8 + T cell exhaustion via maintaining persistent tumor-antigen stimulation

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SYSiqi YuChinese Academy of Medical Sciences & Peking Union Medical CollegePWPujie WuChinese Academy of Medical Sciences & Peking Union Medical CollegeXXXiaoting XieChinese Academy of Medical Sciences & Peking Union Medical College

Key Points

  • The aim is to investigate how tumor-intrinsic factors influence CD8+ T cell exhaustion in cancer.
  • Performed single-cell and spatial proteomics analyses of esophageal squamous cell carcinoma (ESCC) to examine CD8+ T cell trajectories.
  • Identified CKS1B as a facilitator of chronic-like T cell exhaustion through its interaction with IRF3.
  • Conducted pharmacological blockade of CKS1B-IRF3 to evaluate restoration of CD8+ T cell function.
  • CKS1B associates with IRF3 to inhibit type I interferon signaling, leading to CD8+ T cell exhaustion.
  • Pharmacological inhibition of CKS1B-IRF3 interaction with 14i significantly improved CD8+ T cell function.
  • CKS1B's role in establishing an oncogenic-immune axis is applicable across various malignancies.

Abstract

T cell exhaustion is a major barrier to effective antitumor immunity, yet the tumor-intrinsic mechanisms remain poorly defined. Through single-cell and spatial proteomics analyses of esophageal squamous cell carcinoma (ESCC), we uncover two infection-like CD8 + T cell trajectories, acute-like and chronic-like responses, whose fates are dictated by the tumor cell subtypes they encounter. This concept links tumor heterogeneity to the shaping of local immune niches. Mechanistically, we identify CDC28 protein kinase regulatory subunit 1B (CKS1B) as a tumor-intrinsic inducer of chronic-like exhaustion. CKS1B forms a complex with S-phase kinase-associated protein to promote interferon regulatory factor 3 (IRF3) ubiquitination and degradation, thereby suppressing type I interferon signaling and antigen presentation. This impairs tumor cell elimination and drives progressive CD8 + T cell stimulation and exhaustion. Pharmacological blockade of the CKS1B-IRF3 interaction with 14i restores CD8 + T cell function and synergizes with immune checkpoint blockade. The tumor-intrinsic oncogenic-immune axis, which connects cancer cell signaling to immune dysfunction, is conserved across multiple malignancies, establishing a conceptual and therapeutic framework for overcoming tumor-driven T cell exhaustion.

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Cite This Study

Yu et al. (2026) studied this question.

synapsesocial.com/papers/69fd7f4fbfa21ec5bbf07c91https://doi.org/10.1126/sciadv.aec9179
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