The gut microbiota plays a crucial role in regulating fish growth. In this study, we performed 16S rRNA sequencing and metabolomics to compare the gut microbiota and metabolic profiles of fast-growing (FG) and slow-growing (SG) brass gudgeon (Coreius heterodon) from the same family, reared under identical conditions for 12 months. Our results revealed that there was no significant difference in the overall gut microbiota structure between FG and SG groups, but significant differences were observed at specific phylum and genus levels. The FG group harbored a greater abundance of potential probiotics (e. g. , Prevotella, Lactobacillus, and Lachnospiraceae NK4A136group), while opportunistic pathogens such as Klebsiella and Pseudomonas were less abundant. Metabolomics analysis identified 136 differential metabolites, among them, 61 were upregulated and 75 were downregulated in the FG group, with higher levels of phosphatidylcholine, acylcarnitine, and amino acid derivatives in the FG group. KEGG pathway analysis showed enrichment of butanoate metabolism, tryptophan metabolism, and pyrimidine metabolism in the FG group. Spearman correlation analysis indicated that specific gut microbiota was significantly correlated with metabolites involved in energy metabolism, gut homeostasis, and oxidative balance. These findings revealed associations between specific gut microbiota, gut metabolites, and growth performance in brass gudgeon. Although overall community structure did not differ significantly between groups, the compositional and metabolic shifts observed suggest that the gut microbiota–metabolite association might be linked to growth variation. This study provided new insights into the microbiota–metabolite–growth axis of brass gudgeon and offers valuable reference information for the development of specialized probiotic feeds for this species.
Dai et al. (2026) studied this question.