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January 12, 1993Biochemistry291 citations

Betaine can eliminate the base pair composition dependence of DNA melting

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WRWilliam A. ReesTYThomas D. YagerJKJohn Korte

Key Points

  • This research aims to identify how betaine can eliminate the dependence of DNA melting on base pair composition.
  • Investigated the effects of betaine concentrations on DNA melting transitions at approximately 5.2 M.
  • Examined the conformation of double-stranded DNA in high betaine concentrations.
  • Studied DNA-protein interactions in betaine solutions under isostabilizing conditions.
  • Identified an isostabilizing concentration of betaine at 5.2 M, where AT and GC pairs are equally stable.
  • Demonstrated that high betaine concentrations do not significantly alter DNA conformation or electrostatic behavior.
  • Illustrated ribonuclease A's interactions with DNA in concentrated betaine solutions as an example of potential investigations.

Abstract

We show that the amino acid analogue betaine shares with small tetraalkylammonium ions [Melchior, W. B., Jr., this lack of effect on electrostatic interactions is expected because betaine exists as a zwitterion near neutral pH. Study of DNA melting transitions in high concentrations of betaine thus allows the experimental separation of compositional and polyelectrolyte effects on DNA melting. As a consequence, betaine solutions can also be used to investigate DNA-protein interactions under isostabilizing (or close to isostabilizing) conditions, which has not been possible using isostabilizing salts. This potential is illustrated by examining the highly salt concentration-dependent interaction of ribonuclease A with DNA in concentrated betaine solutions.

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Cite This Study

Rees et al. (1993) studied this question.

synapsesocial.com/papers/6a0fd48ffa36b6e053fcf349https://doi.org/10.1021/bi00052a019
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