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February 1, 1992Protein Science527 citationsOpen Access

Atomic solvation parameters applied to molecular dynamics of proteins in solution

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LWLaura WessonDEDavid Eisenberg

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Abstract

A solvation energy function for use in the molecular simulation of proteins is proposed. It is based on the accessible surface areas of atoms in the protein and on atomic solvation parameters derived from empirical vapor-to-water free energies of transfer of amino acid side-chain analogs. The energy function and its derivatives were added to the CHARMM molecular simulation program (Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S., Lauterwein, J., Brown, L.R., & Wuethrich, K., 1980, Biochim. Biophys. Acta 622(2), 219-230).

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Wesson et al. (1992) studied this question.

synapsesocial.com/papers/6a107d04d13714ec96ffeb84https://doi.org/10.1002/pro.5560010204
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