Multi-gene panel testing identified pathogenic variants in 19.6% of 6,093 patients, with Chinese patients having lower rates (18.1%) than Malay (24.0%, p=0.0035) and Indian (24.6%) patients.
Cohort (n=6,093)
No
In a large multi-ethnic Asian cohort, nearly 20% of patients referred for cancer genetic testing carried pathogenic variants, highlighting significant ethnic differences and the clinical value of continuous VUS reassessment.
171 Background: Compared to populations of European-descent, prevalence of pathogenic germline variants in cancer predisposition genes is poorly-defined in Asian populations. Here, we investigate genetic spectrum in cancer susceptibility in the Singapore real-world cancer cohort. Methods: The cancer cohort comprised patients referred to Cancer Genetics Service at the National Cancer Center Singapore (Feb 2014-Nov 2025), who underwent multi-gene panel testing. Predictive testing cases were excluded and only the probands were analyzed. Demographics, medical/family history, and genetic results were prospectively collected via REDCap (v13.1.30). Results: The cohort (N=6093) included Chinese (n=4601, 75.5%), Malay (n=516, 8.5%), and Indian (n=358, 5.9%) patients. Predominant diagnoses were breast (3477/6093, 57.1%) and ovarian (998/6093, 16.4%) cancers. Multiple cancers occurred in 11.6% (707/6093), of which 17.5% (124/707) had combined breast and ovarian cancers. Overall, 19.6% (1195/6093) were positive variant (PV) carriers, primarily in BRCA2 (17.7%), BRCA1 (16.2%), and PALB2 (4.4%). PV rates varied significantly: Chinese patients (18.1%) had lower rates compared to Malay (24.0%, p=0.0035) and Indian patients (24.6%, p=0.0078), with no significant difference between the latter two (p>0.05). Among 669 patients with variant reclassification, 61 (9.1%) novel PV carriers were identified, primarily upgraded from VUS. With a median time to reclassification of 1.55 years, upgraded PVs were most frequently observed in BRCA1 (18.0%), ATM (11.5%), MLH1 (9.8%), and POLE (9.8%). Crucially, 16 pedigrees pursued cascade testing, identifying 33 asymptomatic PV carriers who subsequently became eligible for high-risk surveillance. Conclusions: Leveraging Asia's largest multi-ethnic hereditary cancer cohort with up to 11 years of follow-up, this study highlights the clinical value of Singapore's diverse demographic. It also establishes the critical necessity of continuous VUS reassessment. Systematic, long-term VUS tracking is indispensable for optimizing timely interventions and improving cancer prevention. Reclassified variants and cascade testing outcomes. Gene Category & Key Genes Reclassified PVs, n (%) Median Time to Reclassification, yr (Range) Pedigrees with Cascade Testing, n (%) Novel PV Carriers Identified, n Lynch Syndrome ( MLH1, MSH2 ) 9 (14.8%) 1.5 (0.34-6.5) 5 (55.6%) 13 Hereditary Breast/Ovarian ( BRCA1, BRCA2 ) 12 (19.7%) 1.33 (0.22-4.99) 6 (50%) 15 Gastrointestinal Polyposis ( MUTYH, POLE ) 7 (11.5%) 1.89 (0.36-5.94) 0 (0%) 0 Other HRR / Moderate Risk ( ATM, CHEK2, RAD51C, BARD1 ) 13 (21.3%) 2.5 (0.56-6.37) 1 (7.7%) 1 Rare High-Penetrance ( TP53, VHL, NF1, SDHA, SDHB, POT1 ) 9 (14.7%) 1.1 (0.15-3.33) 4 (44.4%) 4 Other genes ( ERCC4, CFTR, RINT1, TET2, FANCA ) 11 (18.0%) 1.61 (0.54-3.13) 0 (0%) 0 Overall Cohort 61 (100%) 1.55 (0.15-6.5) 16 (26.2%) 33
Yang et al. (Tue,) conducted a cohort in Cancer susceptibility (n=6,093). Multi-gene panel testing was evaluated on Pathogenic variant (PV) carrier rate. Multi-gene panel testing identified pathogenic variants in 19.6% of 6,093 patients, with Chinese patients having lower rates (18.1%) than Malay (24.0%, p=0.0035) and Indian (24.6%) patients.
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