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April 1, 1990Journal of Virology253 citationsOpen Access

Complete nucleotide sequence of infectious Coxsackievirus B3 cDNA: two initial 5' uridine residues are regained during plus-strand RNA synthesis

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WKWOLFGANG M. KLUMPIBIngrid E. BergmannBMBeate Müller

Key Result

Recombinant CVB3 cDNA and in vitro-synthesized RNA transcripts are infectious and regain authentic initial 5' uridine residues during replication in transfected cells.

Key Points

  • To understand the nucleotide sequence of coxsackievirus B3 (CVB3) and its implications for infectivity and replication.
  • Constructed full-length infectious cDNA of CVB3.
  • Compared nucleotide and amino acid sequences with CVB1 and CVB4.
  • Investigated retention of initial 5' uridine residues during RNA synthesis.
  • CVB3 shows 80% nucleotide and 90% amino acid homology with other group B coxsackieviruses.
  • cDNA and in vitro-synthesized RNA transcripts regain initial 5' uridine residues during replication.
  • Five prime terminal sequences demonstrate a conserved pattern important for viral replication.

Structured PICO

P
Population
Coxsackievirus B3 (CVB3) cDNA and in vitro-synthesized RNA transcripts in transfected cells
I
Intervention
Transfection of recombinant CVB3 cDNA and in vitro-synthesized CVB3 RNA transcripts missing two initial 5' uridine residues
C
Comparator
Authentic CVB3 RNA
O
Outcome
Infectivity and regaining of the authentic initial 5' uridine residues during replicationsurrogate

Recombinant CVB3 cDNA and RNA transcripts missing initial 5' uridine residues are infectious and regain these residues during replication, providing a tool to study the pathogenicity of this cardiotropic enterovirus.

Abstract

A full-length reverse-transcribed, infectious cDNA copy of coxsackievirus B3 (CVB3) was used to determine the nucleotide sequence of this cardiotropic enterovirus. Comparison of the nucleotide sequence and the deduced amino acid sequence of the viral precursor polyprotein with the sequences of other group B coxsackieviruses (CVB1 and CVB4) demonstrates a high degree of genetic identity. They share about 80% homology at the nucleotide level and about 90% when the amino acid sequences of the polyproteins are compared. The potential processing sites of the coxsackievirus polyproteins, as deduced from alignment with the poliovirus sequence, are conserved among these enteroviruses with the exception of the cleavage sites between VP1 and 2Apro and between polypeptides 2B and 2C. Comparison of the 5' termini of the enteroviral genomes reveals a high degree of identity, including the initial 5' consensus UUAAAACAGC, suggesting essential functions in virus replication. An important finding concerning the molecular basis of infectivity was that both recombinant CVB3 cDNA and in vitro-synthesized CVB3 RNA transcripts are infectious, although two initial 5' uridine residues found on the authentic CVB3 RNA were missing. Here, we report that cDNA-generated CVB3, as well as CVB3 generated by in vitro-synthesized RNA transcripts, regains the authentic initial 5' uridine residues during replication in transfected cells, indicating that the picornaviral primer molecule VPg-pUpU may be uridylylated in a template-independent fashion. The generation of virus or virus mutants with infectious recombinant CVB3 cDNA and in vitro-synthesized infectious CVB3 transcripts should provide a valuable means for studying the molecular basis of the pathogenicity of this cardiotropic enterovirus.

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Cite This Study

KLUMP et al. (1990) studied Coxsackievirus B3. Recombinant CVB3 cDNA and in vitro-synthesized CVB3 RNA transcripts was evaluated on Nucleotide sequence and infectivity. Recombinant CVB3 cDNA and in vitro-synthesized RNA transcripts are infectious and regain authentic initial 5' uridine residues during replication in transfected cells.

synapsesocial.com/papers/6a634ac2f2b26b064709630ehttps://doi.org/10.1128/jvi.64.4.1573-1583.1990
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