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July 22, 2025Cell ReportsOpen Access

Structure of a SARS-CoV-2 spike S2 subunit in a pre-fusion, open conformation

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Key result

Cryo-EM structure of an engineered SARS-CoV-2 S2-only antigen reveals a more open conformation with stabilizing intermolecular interactions at the trimer base relative to intact spike.

Why the study?

SARS-CoV-2 variant emergence requires immunogens promoting broad, durable immunity, but the conserved pre-fusion S2 subunit irreversibly collapses into a post-fusion conformation without S1.

Population

Convalescent and vaccinated individuals

Comparison

Engineered S2-only antigen vs intact spike

Design

Structural and biophysical study using cryo-EM

Authors

EOEduardo OlmedillasLa Jolla Institute for ImmunologyRRRoshan R. RajamanickamLa Jolla Institute for ImmunologyRARuben Diaz AvalosLa Jolla Institute for Immunology

Discussion

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Implication

Guides S2-based immunogen engineering; leaves open whether this conformation improves vaccine efficacy in humans.

Structured PICO

P
Population
Engineered S2-only antigen and antibodies from convalescent and vaccinated individuals
I
Intervention
High-resolution cryo-EM structure determination using an isolated mAb
O
Outcome
High-resolution cryo-EM structure of pre-fusion S2

The high-resolution cryo-EM structure of the pre-fusion S2 subunit reveals an open conformation that could inform the design of next-generation broad coronavirus booster immunogens.

Cite This Study

Olmedillas et al. (2025) studied SARS-CoV-2. Engineered S2-only antigen vs. Intact spike was evaluated on High-resolution cryo-EM structure of pre-fusion S2. Cryo-EM structure of an engineered SARS-CoV-2 S2-only antigen reveals a more open conformation with stabilizing intermolecular interactions at the trimer base relative to intact spike.

synapsesocial.com/papers/6a6414186d5b4ea2501be8c6https://doi.org/10.1016/j.celrep.2025.116052
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