Key result
The simple linear model Bnet performed equally as well as complex biophysical models in two datasets and outperformed them in predicting cardiac toxicity in a 7-ion-channel dataset (ROC AUC 0.82 vs 0.67 for ORD).
Why the study?
Does a simple linear model (Bnet) predict ion-channel cardiac toxicity as well as complex biophysical models?
Does a simple linear model (Bnet) predict ion-channel cardiac toxicity as well as complex biophysical models?
A simple linear model (Bnet) performs as well as or better than complex biophysical models for predicting drug-induced ion-channel cardiac toxicity, highlighting the value of simpler predictive models.
Simple Bnet matches or exceeds complex models for ion-channel toxicity prediction; leaves open whether it suffices for clinical risk assessment.
There is growing interest in applying detailed mathematical models of the heart for ion-channel related cardiac toxicity prediction. However, a debate as to whether such complex models are required exists. Here an assessment in the predictive performance between two established large-scale biophysical cardiac models and a simple linear model B net was conducted. Three ion-channel data-sets were extracted from literature. Each compound was designated a cardiac risk category using two different classification schemes based on information within CredibleMeds. The predictive performance of each model within each data-set for each classification scheme was assessed via a leave-one-out cross validation. Overall the B net model performed equally as well as the leading cardiac models in two of the data-sets and outperformed both cardiac models on the latest. These results highlight the importance of benchmarking complex versus simple models but also encourage the development of simple models.
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Hitesh Mistry (2018) studied Drug-induced Torsades de Pointes (TdeP) risk. Bnet simple linear model vs. ORD and TT complex biophysical models was evaluated on Predictive performance (ROC AUC) for TdeP risk. The simple linear model Bnet performed equally as well as complex biophysical models in two datasets and outperformed them in predicting cardiac toxicity in a 7-ion-channel dataset (ROC AUC 0.82 vs 0.67 for ORD).
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