Key result
Protein production was markedly reduced when the reporter gene was located downstream of the EMCV IRES compared to cap-dependent upstream translation.
Why the study?
Precise differences in translational efficacy between upstream cap-dependent cistrons and downstream IRES-mediated cistrons in bicistronic vectors needed to be determined for biomedical applications.
The EMCV IRES provided in many commercial vectors is relatively less efficient than cap-dependent translation, which is important for designing bicistronic vectors.
Leaves open precise IRES versus cap-dependent efficiencies in dual-gene vectors; hypothesis-generating data require validation before vector optimization.
BACKGROUND: Internal ribosome entry sites (IRESs) allow the translation of a transcript independent of its cap structure. They are distributed in some viruses and cellular RNA. The element is applied in dual gene expression in a single vector. Although it appears the lower efficiency of IRES-mediated translation than that of cap-dependent translation, it is with the crucial needs to know the precise differences in translational efficacy between upstream cistrons (cap-dependent) and downstream cistrons (IRES-mediate, cap-independent) before applying the bicistronic vector in biomedical applications. METHODS: This study aimed to provide real examples and showed the precise differences for translational efficiency dependent upon target gene locations. We generated various bicistronic constructs with quantifiable reporter genes as upstream and downstream cistrons of the encephalomyocarditis virus (EMCV) IRES to precisely evaluate the efficacy of IRES-mediated translation in mammalian cells. RESULTS: There was no significant difference in protein production when the reporter gene was cloned as an upstream cistron. However, lower levels of protein production were obtained when the reporter gene was located downstream of the IRES. Moreover, in the presence of an upstream cistron, a markedly reduced level of protein production was observed. CONCLUSION: Our findings demonstrate the version of the EMCV IRES that is provided in many commercial vectors is relatively less efficient than cap-dependent translation and provide valuable information regarding the utilization of IRES to facilitate the expression of more than one protein from a transcript.
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Shen et al. (2020) studied this question. Reporter gene located downstream of the EMCV IRES vs. Reporter gene cloned as an upstream cistron (cap-dependent) was evaluated on Protein production / translational efficiency. Protein production was markedly reduced when the reporter gene was located downstream of the EMCV IRES compared to cap-dependent upstream translation.
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