Answers are grounded in this paper and cite their sources.
UNLABELLED: MOODS (MOtif Occurrence Detection Suite) is a software package for matching position weight matrices against DNA sequences. MOODS implements state-of-the-art online matching algorithms, achieving considerably faster scanning speed than with a simple brute-force search. MOODS is written in C++, with bindings for the popular BioPerl and Biopython toolkits. It can easily be adapted for different purposes and integrated into existing workflows. It can also be used as a C++ library. AVAILABILITY: The package with documentation and examples of usage is available at http://www.cs.helsinki.fi/group/pssmfind. The source code is also available under the terms of a GNU General Public License (GPL).
No takes yet. Share an insight, caveat, or question.
Korhonen et al. (2009) studied this question.
Synapse has enriched 10 related papers. Consider them for comparative context: